PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
3451-3500 / 86044 show all
raldana-dualsentieonSNPtimap_l100_m0_e0*
99.0308
99.0400
99.0217
66.4551
21562209215592139
4.2254
ckim-dragenSNPtimap_l100_m0_e0*
98.3169
98.9803
97.6623
69.9393
215492222155751660
11.6279
gduggal-snapfbINDEL*lowcmp_SimpleRepeat_diTR_11to50het
86.5531
82.3858
91.1644
45.8288
129842776215542089859
41.1202
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
88.1593
87.4776
88.8518
37.5644
2146730732155127042453
90.7175
qzeng-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.7222
98.4748
98.9709
68.2697
2156533421542224207
92.4107
rpoplin-dv42SNPtimap_l100_m0_e0*
99.1759
98.9481
99.4047
66.3363
215422292153912985
65.8915
egarrison-hhgaSNPtimap_l100_m0_e0*
99.3678
98.9068
99.8331
66.9886
21533238215343620
55.5556
rpoplin-dv42INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3306
96.7640
97.9038
49.8941
2153072021531461429
93.0586
jli-customSNPtimap_l100_m0_e0*
99.2096
98.8792
99.5422
63.1044
21527244215279935
35.3535
gduggal-bwavardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
51.4833
49.7958
53.2893
59.9443
2157921756215231886618163
96.2737
gduggal-bwaplatSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
86.9355
77.6393
98.7607
75.1429
2148961892151727069
25.5556
gduggal-snapplatSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
84.8609
77.5453
93.7004
78.4378
214636215215081446158
10.9267
astatham-gatkSNPtvmap_l100_m2_e1*
91.8357
85.0651
99.7773
71.9862
215073776215034816
33.3333
gduggal-bwafbSNPtimap_l100_m0_e0*
98.8483
98.7506
98.9461
70.2347
214992722150022969
30.1310
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.3791
96.4809
98.2942
54.2906
2146778321493373326
87.3995
jlack-gatkSNPtimap_l100_m0_e0*
96.2565
98.6312
93.9935
77.0428
21473298214701372141
10.2770
gduggal-bwafbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
94.8782
93.0607
96.7682
51.4476
20706154421469717639
89.1213
mlin-fermikitINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
96.9772
98.0684
95.9100
75.5337
2147642321433914898
98.2495
ghariani-varprowlSNPtimap_l100_m0_e0*
97.9382
98.3970
97.4836
73.1519
2142234921423553140
25.3165
asubramanian-gatkSNPtimap_l100_m1_e0*
61.7256
44.6642
99.8787
83.4799
2140826523214042610
38.4615
hfeng-pmm1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.8177
96.1933
99.4980
48.4397
214038472140410889
82.4074
hfeng-pmm2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.7841
96.1888
99.4332
49.3970
2140284821403122112
91.8033
ndellapenna-hhgaSNPtimap_l100_m0_e0*
99.0443
98.2959
99.8041
65.3402
21400371214014225
59.5238
gduggal-snapfbINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
96.2548
97.7351
94.8187
76.1564
214034962139311691072
91.7023
eyeh-varpipeSNPtimap_l100_m0_e0*
99.1630
99.6279
98.7023
71.7657
21690812137328115
5.3381
qzeng-customSNP*map_l100_m2_e0homalt
87.8998
78.8141
99.3533
60.6693
21692583121356139133
95.6835
ltrigg-rtg1SNPtimap_l100_m0_e0*
98.9181
98.0616
99.7897
58.0234
21349422213534517
37.7778
hfeng-pmm3INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.7273
95.9551
99.5663
48.2367
21350900213519382
88.1720
raldana-dualsentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.2915
95.8966
98.7276
50.7699
2133791321338275268
97.4545
astatham-gatkSNP*map_l125_m1_e0het
85.6838
75.1515
99.6496
79.7424
213377055213317527
36.0000
ckim-isaacSNP*HG002compoundhet*
87.4314
80.5166
95.6453
38.0766
20791503121327971803
82.6982
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
77.4599
71.6987
84.2278
56.4520
1152745502131339913815
95.5901
eyeh-varpipeINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
77.4599
71.6987
84.2278
56.4520
1152745502131339913815
95.5901
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_diTR_11to50*
59.5761
58.3242
60.8829
60.3781
2134215250213091369113201
96.4210
ltrigg-rtg1INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.4780
95.4382
99.6070
47.2963
212351015212908455
65.4762
astatham-gatkSNPtvmap_l100_m2_e0*
91.8266
85.0477
99.7797
71.9649
212903743212864716
34.0426
ltrigg-rtg2SNPtimap_l100_m0_e0*
98.7646
97.6758
99.8779
53.5389
2126550621269267
26.9231
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
72.4961
91.2859
60.1211
52.5391
165831583212451409213777
97.7647
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
72.4961
91.2859
60.1211
52.5391
165831583212451409213777
97.7647
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
50.3682
49.0920
51.7125
68.7841
2127422061212441983719439
97.9936
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
87.7417
84.0451
91.7784
50.9056
1497628432122119011763
92.7407
gduggal-bwafbINDELI6_15**
87.8626
81.3399
95.5225
40.4474
20191463221206994970
97.5855
jlack-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
96.4762
95.2989
97.6829
51.6687
21204104621205503474
94.2346
ckim-isaacSNPtimap_l100_m1_e0het
82.8228
70.7902
99.7835
65.4154
21196874621200464
8.6957
cchapple-customINDELD1_5HG002complexvarhet
99.3604
99.0657
99.6568
53.2015
20571194211967360
82.1918
anovak-vgINDEL*lowcmp_SimpleRepeat_diTR_11to50het
69.5027
72.7855
66.5031
38.8732
11471428921148106528272
77.6568
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
59.2431
51.8849
69.0334
76.6255
16296151122114794864195
44.2231
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
59.2431
51.8849
69.0334
76.6255
16296151122114794864195
44.2231
ckim-isaacSNPtvmap_sirenhet
84.7375
73.6377
99.7775
56.9492
210677542210724712
25.5319
ciseli-customSNP*map_l125_m2_e1het
76.8097
71.1707
83.4191
81.2554
210958545210704188136
3.2474