PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34851-34900 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 75.2336 | 53 | 0 | 53 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 15.5475 | 9.5361 | 42.0635 | 45.6897 | 37 | 351 | 53 | 73 | 43 | 58.9041 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.0099 | 98.0392 | 100.0000 | 24.2857 | 50 | 1 | 53 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3131 | 94.5455 | 98.1481 | 61.7021 | 52 | 3 | 53 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.1963 | 94.5455 | 100.0000 | 61.5942 | 52 | 3 | 53 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 71.3514 | 53 | 0 | 53 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_l100_m1_e0 | het | 93.8053 | 89.8305 | 98.1481 | 82.8025 | 53 | 6 | 53 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e0 | het | 91.3793 | 86.8852 | 96.3636 | 85.8612 | 53 | 8 | 53 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_l100_m2_e1 | het | 91.3793 | 86.8852 | 96.3636 | 86.1111 | 53 | 8 | 53 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 83.4646 | 89.8305 | 77.9412 | 76.1404 | 53 | 6 | 53 | 15 | 14 | 93.3333 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.3793 | 86.8852 | 96.3636 | 58.3333 | 53 | 8 | 53 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 72.1088 | 57.6087 | 96.3636 | 60.1449 | 53 | 39 | 53 | 2 | 1 | 50.0000 | |
| egarrison-hhga | SNP | ti | map_siren | hetalt | 95.4955 | 92.9825 | 98.1481 | 75.0000 | 53 | 4 | 53 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3131 | 94.5455 | 98.1481 | 61.9718 | 52 | 3 | 53 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 93.8053 | 92.9825 | 94.6429 | 99.4760 | 53 | 4 | 53 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 79.6992 | 74.6479 | 85.4839 | 48.7603 | 53 | 18 | 53 | 9 | 7 | 77.7778 | |
| egarrison-hhga | INDEL | D6_15 | map_siren | hetalt | 72.8695 | 58.5859 | 96.3636 | 78.5992 | 58 | 41 | 53 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 70.1987 | 60.9195 | 82.8125 | 80.6647 | 53 | 34 | 53 | 11 | 8 | 72.7273 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 93.8053 | 92.9825 | 94.6429 | 99.4757 | 53 | 4 | 53 | 3 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 76.0181 | 53 | 0 | 53 | 0 | 0 | ||
| dgrover-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 75.1174 | 53 | 0 | 53 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 59.2308 | 52 | 0 | 53 | 0 | 0 | ||
| ckim-isaac | INDEL | D6_15 | map_l125_m1_e0 | * | 61.6279 | 45.2991 | 96.3636 | 90.1434 | 53 | 64 | 53 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | segdup | hetalt | 99.0291 | 98.0769 | 100.0000 | 95.6155 | 51 | 1 | 52 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 82.3091 | 73.9130 | 92.8571 | 85.9649 | 51 | 18 | 52 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 74.6483 | 60.2410 | 98.1132 | 32.9114 | 50 | 33 | 52 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 53.0612 | 96.7191 | 0 | 0 | 52 | 46 | 24 | 52.1739 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 53.0612 | 96.7191 | 0 | 0 | 52 | 46 | 24 | 52.1739 | |
| egarrison-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 70.4679 | 70.6667 | 70.2703 | 56.2130 | 53 | 22 | 52 | 22 | 19 | 86.3636 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 72.8872 | 59.3023 | 94.5455 | 73.4300 | 51 | 35 | 52 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.3442 | 92.7273 | 98.1132 | 61.5942 | 51 | 4 | 52 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.8696 | 1 | 0 | 52 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 61.7761 | 44.6927 | 100.0000 | 30.6667 | 80 | 99 | 52 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l250_m1_e0 | het | 92.0354 | 86.6667 | 98.1132 | 96.1398 | 52 | 8 | 52 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l150_m2_e1 | * | 75.9124 | 61.1765 | 100.0000 | 96.6858 | 52 | 33 | 52 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m0_e0 | homalt | 62.6506 | 45.6140 | 100.0000 | 93.7274 | 52 | 62 | 52 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 100.0000 | 89.1213 | 0 | 0 | 52 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m1_e0 | homalt | 97.2973 | 94.7368 | 100.0000 | 92.3865 | 54 | 3 | 52 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 49.2114 | 63.1579 | 40.3101 | 83.2031 | 60 | 35 | 52 | 77 | 41 | 53.2468 | |
| gduggal-bwaplat | INDEL | D16_PLUS | map_siren | het | 78.7879 | 66.6667 | 96.2963 | 95.7447 | 52 | 26 | 52 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m2_e1 | het | 59.7701 | 42.6230 | 100.0000 | 98.9735 | 52 | 70 | 52 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_siren | hetalt | 75.9124 | 61.9048 | 98.1132 | 96.3423 | 52 | 32 | 52 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 67.4676 | 51.9231 | 96.2963 | 59.0909 | 27 | 25 | 52 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | map_l250_m1_e0 | homalt | 81.8253 | 70.1754 | 98.1132 | 94.2888 | 40 | 17 | 52 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 70.4102 | 58.6207 | 88.1356 | 99.8947 | 51 | 36 | 52 | 7 | 6 | 85.7143 | |
| mlin-fermikit | INDEL | D16_PLUS | segdup | * | 83.1087 | 87.9310 | 78.7879 | 94.7577 | 51 | 7 | 52 | 14 | 7 | 50.0000 | |
| mlin-fermikit | INDEL | D6_15 | map_l150_m2_e1 | * | 68.1223 | 60.0000 | 78.7879 | 86.7735 | 51 | 34 | 52 | 14 | 10 | 71.4286 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 98.1132 | 95.6414 | 0 | 0 | 52 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8447 | 48 | 0 | 52 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | map_l100_m1_e0 | het | 95.5752 | 91.5254 | 100.0000 | 78.2427 | 54 | 5 | 52 | 0 | 0 | ||