PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34601-34650 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | I6_15 | map_l100_m1_e0 | het | 95.7265 | 94.9153 | 96.5517 | 88.7597 | 56 | 3 | 56 | 2 | 1 | 50.0000 | |
| dgrover-gatk | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 68.8889 | 56 | 1 | 56 | 0 | 0 | ||
| ckim-isaac | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 66.2722 | 72.7273 | 60.8696 | 89.6513 | 48 | 18 | 56 | 36 | 4 | 11.1111 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 56.2300 | 84.6154 | 42.1053 | 63.3609 | 143 | 26 | 56 | 77 | 75 | 97.4026 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m1_e0 | het | 60.9393 | 45.2381 | 93.3333 | 89.3993 | 57 | 69 | 56 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | segdup | * | 92.5620 | 96.5517 | 88.8889 | 96.4467 | 56 | 2 | 56 | 7 | 2 | 28.5714 | |
| egarrison-hhga | INDEL | I1_5 | map_l250_m1_e0 | het | 94.1176 | 93.3333 | 94.9153 | 96.5698 | 56 | 4 | 56 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.3913 | 94.9153 | 100.0000 | 60.8392 | 56 | 3 | 56 | 0 | 0 | ||
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e0 | het | 94.9153 | 91.8033 | 98.2456 | 85.7143 | 56 | 5 | 56 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_l100_m2_e1 | het | 94.9153 | 91.8033 | 98.2456 | 85.9606 | 56 | 5 | 56 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 76.5913 | 76.4706 | 76.7123 | 99.5989 | 13 | 4 | 56 | 17 | 14 | 82.3529 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 82.2869 | 90.1639 | 75.6757 | 84.0173 | 55 | 6 | 56 | 18 | 12 | 66.6667 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l250_m1_e0 | het | 94.9153 | 93.3333 | 96.5517 | 96.1691 | 56 | 4 | 56 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 73.3333 | 56 | 1 | 56 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | segdup | * | 96.5517 | 96.5517 | 96.5517 | 97.0272 | 56 | 2 | 56 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 93.7916 | 56 | 1 | 56 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 73.3333 | 56 | 1 | 56 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 89.6000 | 82.3529 | 98.2456 | 96.4128 | 56 | 12 | 56 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | segdup | * | 95.7265 | 96.5517 | 94.9153 | 95.4334 | 56 | 2 | 56 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 88.8889 | 93.3333 | 84.8485 | 97.8138 | 56 | 4 | 56 | 10 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 89.6000 | 91.8033 | 87.5000 | 91.2688 | 56 | 5 | 56 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 89.6000 | 91.8033 | 87.5000 | 91.4894 | 56 | 5 | 56 | 8 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 92.5433 | 56 | 1 | 56 | 0 | 0 | ||
| hfeng-pmm3 | SNP | ti | map_siren | hetalt | 99.1150 | 98.2456 | 100.0000 | 72.8155 | 56 | 1 | 56 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | segdup | * | 94.9153 | 96.5517 | 93.3333 | 95.9541 | 56 | 2 | 56 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 93.4884 | 56 | 1 | 56 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_l250_m1_e0 | het | 94.9153 | 93.3333 | 96.5517 | 96.8132 | 56 | 4 | 56 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m2_e0 | het | 94.9153 | 91.8033 | 98.2456 | 88.2231 | 56 | 5 | 56 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_l100_m2_e1 | het | 94.9153 | 91.8033 | 98.2456 | 88.4146 | 56 | 5 | 56 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | segdup | * | 94.9153 | 96.5517 | 93.3333 | 95.3811 | 56 | 2 | 56 | 4 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 70.1834 | 63.2184 | 78.8732 | 73.6059 | 55 | 32 | 56 | 15 | 14 | 93.3333 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 32.7016 | 22.2672 | 61.5385 | 82.5000 | 55 | 192 | 56 | 35 | 29 | 82.8571 | |
| ciseli-custom | INDEL | * | map_l250_m2_e0 | homalt | 59.5745 | 48.6957 | 76.7123 | 96.9159 | 56 | 59 | 56 | 17 | 11 | 64.7059 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 92.7273 | 86.4407 | 100.0000 | 73.8318 | 51 | 8 | 56 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | segdup | * | 91.0569 | 96.5517 | 86.1538 | 96.9253 | 56 | 2 | 56 | 9 | 2 | 22.2222 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 89.6000 | 81.1594 | 100.0000 | 52.5424 | 56 | 13 | 56 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l250_m1_e0 | homalt | 99.1150 | 98.2456 | 100.0000 | 94.6919 | 56 | 1 | 56 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 90.3226 | 93.3333 | 87.5000 | 97.9368 | 56 | 4 | 56 | 8 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | map_siren | hetalt | 77.2414 | 69.1358 | 87.5000 | 66.4921 | 56 | 25 | 56 | 8 | 7 | 87.5000 | |
| ciseli-custom | SNP | tv | map_siren | hetalt | 77.2414 | 69.1358 | 87.5000 | 66.4921 | 56 | 25 | 56 | 8 | 7 | 87.5000 | |
| cchapple-custom | INDEL | D16_PLUS | segdup | * | 94.8714 | 94.8276 | 94.9153 | 95.0833 | 55 | 3 | 56 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9225 | 84.6154 | 98.2456 | 43.0000 | 11 | 2 | 56 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.7552 | 96.6102 | 94.9153 | 69.5876 | 57 | 2 | 56 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.6454 | 0 | 0 | 56 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 66.4671 | 60 | 1 | 56 | 0 | 0 | ||
| jli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.4775 | 96.7213 | 98.2456 | 75.2174 | 59 | 2 | 56 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l250_m1_e0 | het | 95.7265 | 93.3333 | 98.2456 | 96.0798 | 56 | 4 | 56 | 1 | 0 | 0.0000 | |
| jli-custom | SNP | ti | map_siren | hetalt | 98.2456 | 98.2456 | 98.2456 | 70.4663 | 56 | 1 | 56 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | segdup | * | 94.1176 | 96.5517 | 91.8033 | 97.0113 | 56 | 2 | 56 | 5 | 2 | 40.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 88.7097 | 79.7101 | 100.0000 | 53.3898 | 55 | 14 | 55 | 0 | 0 | ||