PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34401-34450 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e0 | het | 95.0820 | 95.0820 | 95.0820 | 86.6812 | 58 | 3 | 58 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e1 | het | 95.0820 | 95.0820 | 95.0820 | 86.8817 | 58 | 3 | 58 | 3 | 2 | 66.6667 | |
| mlin-fermikit | INDEL | I1_5 | func_cds | het | 98.3051 | 98.3051 | 98.3051 | 27.1605 | 58 | 1 | 58 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 79.7299 | 67.0588 | 98.3051 | 62.1795 | 57 | 28 | 58 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 87.0777 | 90.3226 | 84.0580 | 83.3333 | 56 | 6 | 58 | 11 | 11 | 100.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.1453 | 98.3051 | 100.0000 | 63.9752 | 58 | 1 | 58 | 0 | 0 | ||
| qzeng-custom | INDEL | I6_15 | map_l100_m0_e0 | * | 53.2753 | 57.5758 | 49.5726 | 84.7656 | 19 | 14 | 58 | 59 | 1 | 1.6949 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m1_e0 | het | 84.8574 | 86.9565 | 82.8571 | 91.8320 | 40 | 6 | 58 | 12 | 7 | 58.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e1 | het | 96.4570 | 97.8723 | 95.0820 | 91.6438 | 46 | 1 | 58 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3051 | 100.0000 | 96.6667 | 82.3529 | 61 | 0 | 58 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.4790 | 100.0000 | 95.0820 | 82.6211 | 61 | 0 | 58 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.4762 | 82.6087 | 100.0000 | 56.3910 | 57 | 12 | 58 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4790 | 96.6667 | 98.3051 | 94.5065 | 58 | 2 | 58 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.4790 | 96.6667 | 98.3051 | 94.6266 | 58 | 2 | 58 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m0_e0 | het | 95.0820 | 96.6667 | 93.5484 | 91.2181 | 58 | 2 | 58 | 4 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e0 | het | 89.9225 | 87.8788 | 92.0635 | 96.0427 | 58 | 8 | 58 | 5 | 1 | 20.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e1 | het | 89.9225 | 87.8788 | 92.0635 | 96.1632 | 58 | 8 | 58 | 5 | 1 | 20.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 40.1132 | 30.9859 | 56.8627 | 26.6187 | 44 | 98 | 58 | 44 | 40 | 90.9091 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 48.0929 | 41.6667 | 56.8627 | 26.6187 | 10 | 14 | 58 | 44 | 40 | 90.9091 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m0_e0 | het | 77.8088 | 82.7586 | 73.4177 | 88.3136 | 24 | 5 | 58 | 21 | 11 | 52.3810 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m2_e1 | homalt | 92.7457 | 89.1304 | 96.6667 | 92.9742 | 41 | 5 | 58 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m0_e0 | * | 75.6398 | 67.9487 | 85.2941 | 98.9759 | 53 | 25 | 58 | 10 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 30.6069 | 35.1515 | 27.1028 | 96.8469 | 58 | 107 | 58 | 156 | 7 | 4.4872 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 40.5594 | 95.7390 | 0 | 0 | 58 | 85 | 9 | 10.5882 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.3051 | 96.6667 | 100.0000 | 82.3708 | 58 | 2 | 58 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.3386 | 84.0580 | 100.0000 | 56.0606 | 58 | 11 | 58 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.3051 | 96.6667 | 100.0000 | 81.6456 | 58 | 2 | 58 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m0_e0 | het | 96.6667 | 96.6667 | 96.6667 | 88.9908 | 58 | 2 | 58 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 77.3333 | 63.0435 | 100.0000 | 58.2734 | 58 | 34 | 58 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 76.1194 | 61.4458 | 100.0000 | 31.7647 | 51 | 32 | 58 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 78.1011 | 67.8161 | 92.0635 | 99.9065 | 59 | 28 | 58 | 5 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 93.7433 | 58 | 2 | 58 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m2_e1 | homalt | 98.3051 | 96.6667 | 100.0000 | 93.9012 | 58 | 2 | 58 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l100_m0_e0 | het | 87.2180 | 96.6667 | 79.4521 | 92.0131 | 58 | 2 | 58 | 15 | 2 | 13.3333 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3329 | 98.3607 | 98.3051 | 75.0000 | 60 | 1 | 58 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.0635 | 98.3051 | 86.5672 | 75.1852 | 58 | 1 | 58 | 9 | 9 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 77.3333 | 63.0435 | 100.0000 | 56.3910 | 58 | 34 | 58 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 76.1194 | 61.4458 | 100.0000 | 27.5000 | 51 | 32 | 58 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.4790 | 96.6667 | 98.3051 | 81.6770 | 58 | 2 | 58 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.6940 | 96.7213 | 96.6667 | 70.2970 | 59 | 2 | 58 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3329 | 98.3607 | 98.3051 | 81.7901 | 60 | 1 | 58 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 94.8763 | 58 | 2 | 58 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e1 | homalt | 98.3051 | 96.6667 | 100.0000 | 95.0129 | 58 | 2 | 58 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.7602 | 0 | 0 | 58 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 76.7667 | 64.3678 | 95.0820 | 76.8939 | 56 | 31 | 58 | 3 | 2 | 66.6667 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m1_e0 | * | 81.6901 | 79.4521 | 84.0580 | 91.6566 | 58 | 15 | 58 | 11 | 11 | 100.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m2_e0 | homalt | 98.3051 | 96.6667 | 100.0000 | 94.2517 | 58 | 2 | 58 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l250_m2_e1 | homalt | 98.3051 | 96.6667 | 100.0000 | 94.3961 | 58 | 2 | 58 | 0 | 0 | ||
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.5484 | 95.0820 | 92.0635 | 90.0943 | 58 | 3 | 58 | 5 | 2 | 40.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l250_m2_e0 | het | 91.9483 | 86.3636 | 98.3051 | 92.3575 | 57 | 9 | 58 | 1 | 0 | 0.0000 | |