PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34201-34250 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 93.0233 | 86.9565 | 100.0000 | 58.0420 | 60 | 9 | 60 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e0 | homalt | 99.1736 | 100.0000 | 98.3607 | 94.7952 | 60 | 0 | 60 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e1 | homalt | 99.1736 | 100.0000 | 98.3607 | 94.9670 | 60 | 0 | 60 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.0824 | 92.4242 | 93.7500 | 93.8164 | 61 | 5 | 60 | 4 | 3 | 75.0000 | |
| ckim-vqsr | INDEL | I1_5 | func_cds | het | 98.3607 | 100.0000 | 96.7742 | 64.7727 | 59 | 0 | 60 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | func_cds | het | 98.3607 | 100.0000 | 96.7742 | 42.5926 | 59 | 0 | 60 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 53.3333 | 37.5000 | 92.3077 | 99.6143 | 6 | 10 | 60 | 5 | 5 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e1 | homalt | 94.4882 | 89.5522 | 100.0000 | 87.8543 | 60 | 7 | 60 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 94.4882 | 93.7500 | 95.2381 | 93.7808 | 60 | 4 | 60 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | INDEL | I1_5 | func_cds | het | 98.3607 | 100.0000 | 96.7742 | 59.4771 | 59 | 0 | 60 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | * | map_l250_m0_e0 | * | 64.4116 | 67.9487 | 61.2245 | 98.1965 | 53 | 25 | 60 | 38 | 20 | 52.6316 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 79.3685 | 71.2644 | 89.5522 | 70.7424 | 62 | 25 | 60 | 7 | 3 | 42.8571 | |
| anovak-vg | INDEL | D1_5 | map_l150_m0_e0 | homalt | 79.2389 | 69.4118 | 92.3077 | 92.5373 | 59 | 26 | 60 | 5 | 4 | 80.0000 | |
| astatham-gatk | INDEL | I1_5 | func_cds | het | 98.3607 | 100.0000 | 96.7742 | 40.9524 | 59 | 0 | 60 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e0 | het | 93.7500 | 90.9091 | 96.7742 | 97.0878 | 60 | 6 | 60 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | map_l250_m2_e1 | het | 93.7500 | 90.9091 | 96.7742 | 97.1946 | 60 | 6 | 60 | 2 | 0 | 0.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 61.6716 | 83.8235 | 48.7805 | 53.5849 | 57 | 11 | 60 | 63 | 57 | 90.4762 | |
| anovak-vg | INDEL | I6_15 | map_l100_m1_e0 | * | 54.0541 | 50.0000 | 58.8235 | 80.7547 | 57 | 57 | 60 | 42 | 24 | 57.1429 | |
| anovak-vg | SNP | * | tech_badpromoters | het | 84.5070 | 77.9221 | 92.3077 | 45.8333 | 60 | 17 | 60 | 5 | 5 | 100.0000 | |
| anovak-vg | SNP | tv | tech_badpromoters | * | 89.6729 | 84.7222 | 95.2381 | 42.7273 | 61 | 11 | 60 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | func_cds | het | 98.3607 | 100.0000 | 96.7742 | 41.5094 | 59 | 0 | 60 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | func_cds | het | 97.5610 | 100.0000 | 95.2381 | 64.4068 | 59 | 0 | 60 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m2_e0 | het | 91.6031 | 90.9091 | 92.3077 | 97.0252 | 60 | 6 | 60 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l250_m2_e1 | het | 91.6031 | 90.9091 | 92.3077 | 97.1302 | 60 | 6 | 60 | 5 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.0504 | 93.8462 | 98.3607 | 82.7684 | 61 | 4 | 60 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I1_5 | func_cds | het | 98.3329 | 98.3051 | 98.3607 | 39.0000 | 58 | 1 | 60 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e0 | het | 91.4729 | 89.3939 | 93.6508 | 96.7102 | 59 | 7 | 59 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e1 | het | 91.4729 | 89.3939 | 93.6508 | 96.8117 | 59 | 7 | 59 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 93.6508 | 100.0000 | 88.0597 | 74.5247 | 59 | 0 | 59 | 8 | 7 | 87.5000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.1453 | 98.3051 | 100.0000 | 59.3103 | 58 | 1 | 59 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | func_cds | het | 95.9350 | 100.0000 | 92.1875 | 52.9412 | 59 | 0 | 59 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 99.1597 | 98.3333 | 100.0000 | 80.9677 | 59 | 1 | 59 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.9134 | 100.0000 | 86.7647 | 77.6316 | 59 | 0 | 59 | 9 | 9 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 62.6582 | 59 | 0 | 59 | 0 | 0 | ||
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e0 | het | 96.7213 | 96.7213 | 96.7213 | 89.9007 | 59 | 2 | 59 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e1 | het | 96.7213 | 96.7213 | 96.7213 | 90.1135 | 59 | 2 | 59 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e0 | homalt | 99.1597 | 98.3333 | 100.0000 | 95.0669 | 59 | 1 | 59 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e1 | homalt | 99.1597 | 98.3333 | 100.0000 | 95.1915 | 59 | 1 | 59 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l100_m0_e0 | het | 92.9134 | 98.3333 | 88.0597 | 92.8875 | 59 | 1 | 59 | 8 | 1 | 12.5000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.9134 | 100.0000 | 86.7647 | 76.7123 | 59 | 0 | 59 | 9 | 9 | 100.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 64.2424 | 59 | 0 | 59 | 0 | 0 | ||
| ckim-gatk | INDEL | I6_15 | map_l100_m2_e0 | het | 95.9350 | 96.7213 | 95.1613 | 91.7663 | 59 | 2 | 59 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_l100_m2_e1 | het | 95.9350 | 96.7213 | 95.1613 | 91.9585 | 59 | 2 | 59 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 88.0597 | 96.3106 | 0 | 0 | 59 | 8 | 3 | 37.5000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e0 | het | 83.6445 | 85.4167 | 81.9444 | 92.5620 | 41 | 7 | 59 | 13 | 7 | 53.8462 | |
| cchapple-custom | INDEL | D6_15 | map_l100_m1_e0 | homalt | 95.9870 | 93.7500 | 98.3333 | 82.2485 | 60 | 4 | 59 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m1_e0 | * | 81.9444 | 80.8219 | 83.0986 | 93.6036 | 59 | 14 | 59 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 61.3118 | 56.4815 | 67.0455 | 85.0085 | 61 | 47 | 59 | 29 | 28 | 96.5517 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m1_e0 | het | 90.7692 | 98.3333 | 84.2857 | 97.7827 | 59 | 1 | 59 | 11 | 3 | 27.2727 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 71.3785 | 86.3636 | 60.8247 | 96.1886 | 57 | 9 | 59 | 38 | 3 | 7.8947 | |