PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34151-34200 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 76.9231 | 65.2174 | 93.7500 | 58.4416 | 60 | 32 | 60 | 4 | 1 | 25.0000 | |
| jlack-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 76.9417 | 63.8554 | 96.7742 | 29.5455 | 53 | 30 | 60 | 2 | 1 | 50.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.0233 | 90.9091 | 95.2381 | 93.5252 | 60 | 6 | 60 | 3 | 3 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 93.0233 | 88.2353 | 98.3607 | 71.6279 | 60 | 8 | 60 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 93.0233 | 88.2353 | 98.3607 | 72.8889 | 60 | 8 | 60 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.1918 | 84.5070 | 80.0000 | 56.3953 | 60 | 11 | 60 | 15 | 15 | 100.0000 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 93.7500 | 88.2353 | 100.0000 | 73.9130 | 60 | 8 | 60 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 93.7500 | 88.2353 | 100.0000 | 75.5102 | 60 | 8 | 60 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.7500 | 98.3607 | 89.5522 | 91.1842 | 60 | 1 | 60 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | SNP | tv | tech_badpromoters | * | 91.8292 | 86.1111 | 98.3607 | 51.2000 | 62 | 10 | 60 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 89.5522 | 81.0811 | 100.0000 | 84.4156 | 60 | 14 | 60 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 57.1429 | 40.2685 | 98.3607 | 88.5338 | 60 | 89 | 60 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.7717 | 60 | 0 | 60 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.8904 | 60 | 0 | 60 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I1_5 | func_cds | het | 97.5336 | 98.3051 | 96.7742 | 42.0561 | 58 | 1 | 60 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 90.0901 | 89.2857 | 90.9091 | 84.7575 | 100 | 12 | 60 | 6 | 6 | 100.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 99.1736 | 100.0000 | 98.3607 | 83.9895 | 2 | 0 | 60 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e0 | hetalt | 64.5161 | 48.0000 | 98.3607 | 95.7639 | 60 | 65 | 60 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 74.0741 | 58.8235 | 100.0000 | 75.2066 | 60 | 42 | 60 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D6_15 | map_l100_m0_e0 | het | 91.4037 | 93.3333 | 89.5522 | 86.6534 | 56 | 4 | 60 | 7 | 6 | 85.7143 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 62.5000 | 47.6190 | 90.9091 | 74.4186 | 40 | 44 | 60 | 6 | 6 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8498 | 95.3846 | 98.3607 | 77.7372 | 62 | 3 | 60 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e0 | het | 92.9378 | 89.3939 | 96.7742 | 93.0023 | 59 | 7 | 60 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l250_m2_e1 | het | 92.9378 | 89.3939 | 96.7742 | 93.3405 | 59 | 7 | 60 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 93.0233 | 86.9565 | 100.0000 | 86.6667 | 60 | 9 | 60 | 0 | 0 | ||
| mlin-fermikit | INDEL | * | map_l250_m1_e0 | het | 46.6926 | 31.5789 | 89.5522 | 92.7095 | 60 | 130 | 60 | 7 | 1 | 14.2857 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e1 | homalt | 60.9137 | 51.7241 | 74.0741 | 92.4791 | 60 | 56 | 60 | 21 | 20 | 95.2381 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 41.1619 | 58.5185 | 31.7460 | 42.9003 | 79 | 56 | 60 | 129 | 126 | 97.6744 | |
| qzeng-custom | SNP | * | map_siren | hetalt | 86.0912 | 76.5432 | 98.3607 | 83.9474 | 62 | 19 | 60 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | map_siren | hetalt | 86.0912 | 76.5432 | 98.3607 | 83.9474 | 62 | 19 | 60 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 82.4324 | 70.1149 | 100.0000 | 99.9146 | 61 | 26 | 60 | 0 | 0 | ||
| qzeng-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 74.5342 | 66.6667 | 84.5070 | 97.7222 | 2 | 1 | 60 | 11 | 1 | 9.0909 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m1_e0 | het | 83.3333 | 93.7500 | 75.0000 | 90.8780 | 60 | 4 | 60 | 20 | 19 | 95.0000 | |
| jpowers-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 82.1918 | 90.9091 | 75.0000 | 96.2512 | 60 | 6 | 60 | 20 | 3 | 15.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.7717 | 0 | 0 | 60 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.0992 | 93.9394 | 98.3607 | 89.4646 | 62 | 4 | 60 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | func_cds | het | 93.0233 | 100.0000 | 86.9565 | 63.4921 | 59 | 0 | 60 | 9 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.7695 | 60 | 0 | 60 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.9394 | 60 | 0 | 60 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8498 | 95.3846 | 98.3607 | 81.8452 | 62 | 3 | 60 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 91.9372 | 86.3014 | 98.3607 | 77.2388 | 63 | 10 | 60 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m1_e0 | het | 96.7742 | 93.7500 | 100.0000 | 86.1751 | 60 | 4 | 60 | 0 | 0 | ||
| gduggal-snapvard | SNP | tv | tech_badpromoters | * | 85.8248 | 84.7222 | 86.9565 | 55.7692 | 61 | 11 | 60 | 9 | 1 | 11.1111 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 85.3778 | 78.3784 | 93.7500 | 77.9310 | 58 | 16 | 60 | 4 | 2 | 50.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 80.8625 | 80.6452 | 81.0811 | 77.1605 | 50 | 12 | 60 | 14 | 13 | 92.8571 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 16.8844 | 12.6126 | 25.5319 | 75.5463 | 56 | 388 | 60 | 175 | 113 | 64.5714 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 72.9446 | 66.2921 | 81.0811 | 71.4286 | 59 | 30 | 60 | 14 | 14 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 74.0111 | 93.5484 | 61.2245 | 84.4444 | 58 | 4 | 60 | 38 | 37 | 97.3684 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.3357 | 93.9394 | 96.7742 | 87.8431 | 62 | 4 | 60 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.5207 | 95.1613 | 100.0000 | 85.4369 | 59 | 3 | 60 | 0 | 0 | ||