PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33951-34000 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e1 | het | 96.1832 | 95.4545 | 96.9231 | 96.3401 | 63 | 3 | 63 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.4545 | 91.3043 | 100.0000 | 91.5663 | 63 | 6 | 63 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 81.2903 | 68.4783 | 100.0000 | 58.5526 | 63 | 29 | 63 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 80.5755 | 67.4699 | 100.0000 | 30.7692 | 56 | 27 | 63 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.5638 | 88.7324 | 80.7692 | 54.9133 | 63 | 8 | 63 | 15 | 15 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 84.0102 | 63 | 2 | 63 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l100_m1_e0 | homalt | 99.2126 | 98.4375 | 100.0000 | 85.0000 | 63 | 1 | 63 | 0 | 0 | ||
| jlack-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 95.4545 | 91.3043 | 100.0000 | 90.5405 | 63 | 6 | 63 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m1_e0 | homalt | 98.4375 | 98.4375 | 98.4375 | 84.1975 | 63 | 1 | 63 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e0 | homalt | 97.6744 | 96.9231 | 98.4375 | 85.9956 | 63 | 2 | 63 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 92.6471 | 86.3014 | 100.0000 | 73.5294 | 63 | 10 | 63 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 83.7838 | 72.0930 | 100.0000 | 72.0000 | 62 | 24 | 63 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m1_e0 | homalt | 97.6378 | 96.8750 | 98.4127 | 85.6818 | 62 | 2 | 62 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l125_m1_e0 | het | 97.6378 | 96.8750 | 98.4127 | 91.4286 | 62 | 2 | 62 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e0 | het | 95.3846 | 93.9394 | 96.8750 | 96.3595 | 62 | 4 | 62 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l250_m2_e1 | het | 95.3846 | 93.9394 | 96.8750 | 96.4699 | 62 | 4 | 62 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | map_siren | hetalt | 91.8519 | 86.1111 | 98.4127 | 77.2563 | 62 | 10 | 62 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 50.0000 | 96.3237 | 0 | 0 | 62 | 62 | 17 | 27.4194 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 50.0000 | 96.3237 | 0 | 0 | 62 | 62 | 17 | 27.4194 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 12.5633 | 8.8953 | 21.3793 | 49.9136 | 62 | 635 | 62 | 228 | 224 | 98.2456 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 29.1765 | 45.9259 | 21.3793 | 49.5652 | 62 | 73 | 62 | 228 | 224 | 98.2456 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8750 | 95.3846 | 98.4127 | 89.8387 | 62 | 3 | 62 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 49.6249 | 35.0531 | 84.9315 | 68.9362 | 231 | 428 | 62 | 11 | 11 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 49.6249 | 35.0531 | 84.9315 | 68.9362 | 231 | 428 | 62 | 11 | 11 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 52.5424 | 36.0465 | 96.8750 | 65.2174 | 62 | 110 | 62 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e0 | het | 85.5453 | 95.4545 | 77.5000 | 97.4202 | 63 | 3 | 62 | 18 | 4 | 22.2222 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e1 | het | 85.5453 | 95.4545 | 77.5000 | 97.4992 | 63 | 3 | 62 | 18 | 4 | 22.2222 | |
| gduggal-bwaplat | INDEL | * | map_l100_m2_e1 | hetalt | 63.5897 | 46.9697 | 98.4127 | 95.7461 | 62 | 70 | 62 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 58.2160 | 41.0596 | 100.0000 | 66.4865 | 62 | 89 | 62 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.8750 | 96.8750 | 96.8750 | 84.6154 | 62 | 2 | 62 | 2 | 1 | 50.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 84.3537 | 73.8095 | 98.4127 | 62.2754 | 62 | 22 | 62 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | map_siren | het | 71.4286 | 76.9231 | 66.6667 | 92.1980 | 60 | 18 | 62 | 31 | 14 | 45.1613 | |
| mlin-fermikit | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 62.9442 | 87.3239 | 49.2063 | 47.2803 | 62 | 9 | 62 | 64 | 64 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_siren | hetalt | 91.9492 | 87.5000 | 96.8750 | 79.3548 | 63 | 9 | 62 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 92.8230 | 86.6071 | 100.0000 | 66.1202 | 97 | 15 | 62 | 0 | 0 | ||
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | het | 75.4127 | 63.6364 | 92.5373 | 98.3941 | 42 | 24 | 62 | 5 | 4 | 80.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 93.4307 | 87.6712 | 100.0000 | 77.5362 | 64 | 9 | 62 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.9460 | 95.5224 | 98.4127 | 77.8947 | 64 | 3 | 62 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 79.5382 | 68.9655 | 93.9394 | 75.0943 | 60 | 27 | 62 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m1_e0 | homalt | 98.4127 | 96.8750 | 100.0000 | 86.6953 | 62 | 2 | 62 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m1_e0 | het | 96.8750 | 96.8750 | 96.8750 | 92.6267 | 62 | 2 | 62 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9223 | 96.9697 | 96.8750 | 89.1156 | 64 | 2 | 62 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.1870 | 98.3871 | 100.0000 | 85.7798 | 61 | 1 | 62 | 0 | 0 | ||
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.6565 | 93.9394 | 95.3846 | 93.7440 | 62 | 4 | 62 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D16_PLUS | map_siren | * | 55.8559 | 43.3566 | 78.4810 | 82.5221 | 62 | 81 | 62 | 17 | 14 | 82.3529 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.0931 | 90.9091 | 95.3846 | 93.9309 | 60 | 6 | 62 | 3 | 3 | 100.0000 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.6565 | 93.9394 | 95.3846 | 93.7977 | 62 | 4 | 62 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m1_e0 | homalt | 98.4127 | 96.8750 | 100.0000 | 86.5510 | 62 | 2 | 62 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 96.8750 | 96.8750 | 96.8750 | 92.7273 | 62 | 2 | 62 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1706 | 96.9697 | 95.3846 | 89.0756 | 64 | 2 | 62 | 3 | 0 | 0.0000 | |