PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33901-33950 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 96.1832 | 92.6471 | 100.0000 | 72.7273 | 63 | 5 | 63 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 96.1832 | 92.6471 | 100.0000 | 74.2857 | 63 | 5 | 63 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 87.0902 | 63 | 2 | 63 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 16.9764 | 10.8209 | 39.3750 | 52.0958 | 58 | 478 | 63 | 97 | 77 | 79.3814 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 95.4545 | 92.6471 | 98.4375 | 71.1712 | 63 | 5 | 63 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.4545 | 92.6471 | 98.4375 | 72.7660 | 63 | 5 | 63 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 87.2211 | 63 | 2 | 63 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 90.0000 | 85.1351 | 95.4545 | 79.7546 | 63 | 11 | 63 | 3 | 3 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 18.3861 | 14.4397 | 25.3012 | 64.2755 | 67 | 397 | 63 | 186 | 4 | 2.1505 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 21.0702 | 87.1009 | 0 | 0 | 63 | 236 | 11 | 4.6610 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 11.1206 | 7.0388 | 26.4706 | 75.6646 | 58 | 766 | 63 | 175 | 113 | 64.5714 | |
| gduggal-snapvard | INDEL | D1_5 | func_cds | homalt | 90.3704 | 82.4324 | 100.0000 | 25.8824 | 61 | 13 | 63 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 49.0421 | 92.7536 | 33.3333 | 92.3171 | 64 | 5 | 63 | 126 | 5 | 3.9683 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 95.4998 | 94.1176 | 96.9231 | 69.9074 | 64 | 4 | 63 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_siren | * | 81.8182 | 73.2558 | 92.6471 | 71.7842 | 63 | 23 | 63 | 5 | 3 | 60.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 86.7711 | 82.6667 | 91.3043 | 65.6716 | 62 | 13 | 63 | 6 | 4 | 66.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e1 | het | 75.4491 | 63.6364 | 92.6471 | 98.4019 | 42 | 24 | 63 | 5 | 4 | 80.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.9231 | 96.9231 | 96.9231 | 85.4911 | 63 | 2 | 63 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 95.4545 | 92.6471 | 98.4375 | 72.8814 | 63 | 5 | 63 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.4545 | 92.6471 | 98.4375 | 74.4000 | 63 | 5 | 63 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.1832 | 96.9231 | 95.4545 | 84.6512 | 63 | 2 | 63 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m1_e0 | het | 70.1405 | 54.9550 | 96.9231 | 97.0865 | 61 | 50 | 63 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 96.1832 | 92.6471 | 100.0000 | 73.9669 | 63 | 5 | 63 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 96.1832 | 92.6471 | 100.0000 | 75.2941 | 63 | 5 | 63 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 87.4251 | 63 | 2 | 63 | 0 | 0 | ||
| egarrison-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.6471 | 91.3043 | 94.0299 | 88.5470 | 63 | 6 | 63 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0988 | 8 | 0 | 63 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 64.3340 | 49.2754 | 92.6471 | 74.9077 | 34 | 35 | 63 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 33.5518 | 21.9101 | 71.5909 | 58.0952 | 39 | 139 | 63 | 25 | 25 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.1832 | 94.0299 | 98.4375 | 89.9054 | 63 | 4 | 63 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | map_siren | homalt | 81.8182 | 70.0000 | 98.4375 | 70.2326 | 63 | 27 | 63 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 90.3704 | 82.4324 | 100.0000 | 73.8589 | 61 | 13 | 63 | 0 | 0 | ||
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 92.6471 | 92.6471 | 92.6471 | 97.3344 | 63 | 5 | 63 | 5 | 3 | 60.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | het | 96.9231 | 98.4375 | 95.4545 | 92.5255 | 63 | 1 | 63 | 3 | 0 | 0.0000 | |
| ckim-dragen | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.5236 | 90.9091 | 98.4375 | 94.3662 | 60 | 6 | 63 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l125_m1_e0 | * | 54.5455 | 53.8462 | 55.2632 | 91.9718 | 63 | 54 | 63 | 51 | 28 | 54.9020 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 75.9036 | 96.3850 | 0 | 0 | 63 | 20 | 0 | 0.0000 | |
| cchapple-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 78.2609 | 88.7324 | 70.0000 | 29.1339 | 63 | 8 | 63 | 27 | 27 | 100.0000 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 54.2839 | 89.8551 | 38.8889 | 90.3514 | 62 | 7 | 63 | 99 | 24 | 24.2424 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 96.1832 | 92.6471 | 100.0000 | 73.9669 | 63 | 5 | 63 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 96.1832 | 92.6471 | 100.0000 | 75.2941 | 63 | 5 | 63 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 87.4251 | 63 | 2 | 63 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 91.3043 | 95.6522 | 0 | 0 | 63 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 85.1064 | 63 | 2 | 63 | 0 | 0 | ||
| jli-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.0299 | 95.4545 | 92.6471 | 93.4866 | 63 | 3 | 63 | 5 | 3 | 60.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 96.1832 | 92.6471 | 100.0000 | 97.0071 | 63 | 5 | 63 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 95.9898 | 0 | 0 | 63 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.5529 | 87.3239 | 94.0299 | 48.4615 | 62 | 9 | 63 | 4 | 4 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e0 | homalt | 98.4375 | 96.9231 | 100.0000 | 84.0909 | 63 | 2 | 63 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l250_m2_e0 | het | 96.1832 | 95.4545 | 96.9231 | 96.2165 | 63 | 3 | 63 | 2 | 0 | 0.0000 | |