PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33801-33850 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | I1_5 | map_l150_m0_e0 | homalt | 73.9161 | 59.7015 | 97.0149 | 91.4650 | 40 | 27 | 65 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.8054 | 92.7536 | 92.8571 | 88.0342 | 64 | 5 | 65 | 5 | 5 | 100.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 73.3215 | 58.4000 | 98.4848 | 34.0000 | 73 | 52 | 65 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 81.4336 | 70.9302 | 95.5882 | 72.4696 | 61 | 25 | 65 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.6255 | 94.6746 | 64.3564 | 81.0507 | 160 | 9 | 65 | 36 | 36 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.4848 | 97.0149 | 100.0000 | 83.9901 | 65 | 2 | 65 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.0662 | 93.4911 | 67.0103 | 81.9367 | 158 | 11 | 65 | 32 | 32 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.4848 | 97.0149 | 100.0000 | 84.0686 | 65 | 2 | 65 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.0103 | 95.8580 | 64.3564 | 80.8712 | 162 | 7 | 65 | 36 | 36 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.2469 | 79.2683 | 81.2500 | 69.2308 | 65 | 17 | 65 | 15 | 15 | 100.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.0149 | 100.0000 | 94.2029 | 85.9470 | 2 | 0 | 65 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.9478 | 3 | 0 | 65 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 56.0345 | 40.3727 | 91.5493 | 70.2929 | 65 | 96 | 65 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_siren | hetalt | 74.1573 | 58.9286 | 100.0000 | 95.6405 | 66 | 46 | 65 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 91.5493 | 95.3806 | 0 | 0 | 65 | 6 | 3 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 91.5493 | 95.7485 | 0 | 0 | 65 | 6 | 3 | 50.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e0 | het | 83.3333 | 91.5493 | 76.4706 | 91.2099 | 65 | 6 | 65 | 20 | 19 | 95.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l125_m2_e1 | het | 82.8025 | 91.5493 | 75.5814 | 91.2779 | 65 | 6 | 65 | 21 | 20 | 95.2381 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m1_e0 | * | 67.0103 | 57.0175 | 81.2500 | 85.1852 | 65 | 49 | 65 | 15 | 15 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_siren | homalt | 81.7610 | 72.2222 | 94.2029 | 75.1799 | 65 | 25 | 65 | 4 | 3 | 75.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2366 | 100.0000 | 98.4848 | 88.7564 | 67 | 0 | 65 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | map_siren | hetalt | 94.1176 | 88.8889 | 100.0000 | 80.5970 | 64 | 8 | 65 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 94.2029 | 89.5928 | 0 | 0 | 65 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 96.0123 | 0 | 0 | 65 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.4545 | 91.3043 | 100.0000 | 69.3396 | 63 | 6 | 65 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.4848 | 97.0149 | 100.0000 | 85.0575 | 65 | 2 | 65 | 0 | 0 | ||
| anovak-vg | INDEL | D6_15 | map_l150_m2_e1 | * | 79.8957 | 77.6471 | 82.2785 | 91.1236 | 66 | 19 | 65 | 14 | 9 | 64.2857 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 90.7407 | 83.0508 | 100.0000 | 71.4912 | 49 | 10 | 65 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.4848 | 97.0149 | 100.0000 | 89.9691 | 65 | 2 | 65 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.4848 | 97.0149 | 100.0000 | 87.1287 | 65 | 2 | 65 | 0 | 0 | ||
| astatham-gatk | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.4848 | 97.0149 | 100.0000 | 87.0518 | 65 | 2 | 65 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 94.2029 | 89.0411 | 100.0000 | 68.7500 | 65 | 8 | 65 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | map_siren | hetalt | 94.8905 | 90.2778 | 100.0000 | 74.5098 | 65 | 7 | 65 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e1 | homalt | 97.7444 | 97.0149 | 98.4848 | 85.8974 | 65 | 2 | 65 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | * | segdup | hetalt | 51.6497 | 35.3846 | 95.5882 | 96.8649 | 46 | 84 | 65 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_siren | hetalt | 87.4083 | 78.5714 | 98.4848 | 91.1409 | 66 | 18 | 65 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m0_e0 | het | 96.2238 | 98.3333 | 94.2029 | 88.3051 | 59 | 1 | 65 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 92.8571 | 87.8378 | 98.4848 | 78.0000 | 65 | 9 | 65 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 70.1319 | 59.4340 | 85.5263 | 73.7024 | 63 | 43 | 65 | 11 | 7 | 63.6364 | |
| ckim-vqsr | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 97.0149 | 95.5882 | 98.4848 | 97.0014 | 65 | 3 | 65 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.4848 | 97.0149 | 100.0000 | 87.3294 | 65 | 2 | 65 | 0 | 0 | ||
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 96.2963 | 95.5882 | 97.0149 | 96.9378 | 65 | 3 | 65 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m2_e1 | homalt | 95.5224 | 95.5224 | 95.5224 | 84.7727 | 64 | 3 | 64 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 71.9101 | 94.2875 | 0 | 0 | 64 | 25 | 24 | 96.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m0_e0 | homalt | 71.1111 | 56.1404 | 96.9697 | 81.1429 | 64 | 50 | 64 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e1 | homalt | 97.7099 | 95.5224 | 100.0000 | 87.3016 | 64 | 3 | 64 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 80.0000 | 94.8520 | 0 | 0 | 64 | 16 | 13 | 81.2500 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | homalt | 98.0930 | 97.7273 | 98.4615 | 95.3472 | 43 | 1 | 64 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m1_e0 | het | 84.2017 | 98.4375 | 73.5632 | 93.0732 | 63 | 1 | 64 | 23 | 16 | 69.5652 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 51.6493 | 35.3933 | 95.5224 | 83.2080 | 63 | 115 | 64 | 3 | 3 | 100.0000 | |