PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33701-33750 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 79.1925 | 67 | 5 | 67 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e0 | het | 97.1014 | 94.3662 | 100.0000 | 89.5149 | 67 | 4 | 67 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e1 | het | 97.1014 | 94.3662 | 100.0000 | 89.7239 | 67 | 4 | 67 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 89.3333 | 94.3662 | 84.8101 | 93.8807 | 67 | 4 | 67 | 12 | 1 | 8.3333 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 89.3333 | 94.3662 | 84.8101 | 94.0197 | 67 | 4 | 67 | 12 | 1 | 8.3333 | |
| jlack-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 88.8889 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 78.5256 | 67 | 5 | 67 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 87.5676 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 79.7583 | 67 | 5 | 67 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 94.9640 | 90.4110 | 100.0000 | 74.9049 | 66 | 7 | 66 | 0 | 0 | ||
| hfeng-pmm1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 91.3158 | 66 | 3 | 66 | 0 | 0 | ||
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 86.4432 | 77.0115 | 98.5075 | 99.9051 | 67 | 20 | 66 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 92.2535 | 66 | 3 | 66 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e1 | homalt | 97.7778 | 98.5075 | 97.0588 | 85.2495 | 66 | 1 | 66 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | het | 83.1234 | 76.9231 | 90.4110 | 81.1370 | 60 | 18 | 66 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 62.5592 | 92.9577 | 47.1429 | 58.2090 | 66 | 5 | 66 | 74 | 74 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 89.5864 | 85.3333 | 94.2857 | 58.3333 | 64 | 11 | 66 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | map_l150_m0_e0 | homalt | 57.3913 | 40.2439 | 100.0000 | 96.0667 | 66 | 98 | 66 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 84.7682 | 73.5632 | 100.0000 | 83.5821 | 64 | 23 | 66 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 66.7081 | 53.2787 | 89.1892 | 86.8093 | 65 | 57 | 66 | 8 | 8 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 73.0417 | 73.5632 | 72.5275 | 81.8363 | 64 | 23 | 66 | 25 | 17 | 68.0000 | |
| gduggal-bwavard | INDEL | D1_5 | func_cds | homalt | 94.2857 | 89.1892 | 100.0000 | 22.3529 | 66 | 8 | 66 | 0 | 0 | ||
| qzeng-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 84.9421 | 93.7500 | 77.6471 | 53.8043 | 15 | 1 | 66 | 19 | 2 | 10.5263 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_siren | hetalt | 94.8905 | 90.2778 | 100.0000 | 81.4085 | 65 | 7 | 66 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.9816 | 80.4878 | 81.4815 | 72.4490 | 66 | 16 | 66 | 15 | 14 | 93.3333 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m0_e0 | homalt | 65.3465 | 57.8947 | 75.0000 | 76.9029 | 66 | 48 | 66 | 22 | 21 | 95.4545 | |
| mlin-fermikit | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.2734 | 94.2029 | 64.0777 | 91.7797 | 65 | 4 | 66 | 37 | 26 | 70.2703 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e0 | * | 83.0189 | 80.4878 | 85.7143 | 91.6847 | 66 | 16 | 66 | 11 | 11 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | map_l150_m2_e1 | * | 80.9816 | 77.6471 | 84.6154 | 91.7373 | 66 | 19 | 66 | 12 | 12 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e0 | * | 67.0051 | 56.8966 | 81.4815 | 86.4775 | 66 | 50 | 66 | 15 | 15 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e1 | * | 67.0051 | 56.8966 | 81.4815 | 86.6776 | 66 | 50 | 66 | 15 | 15 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 94.9640 | 90.4110 | 100.0000 | 75.3731 | 66 | 7 | 66 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I6_15 | map_siren | hetalt | 95.6522 | 91.6667 | 100.0000 | 77.7778 | 66 | 6 | 66 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | map_siren | hetalt | 88.0000 | 81.4815 | 95.6522 | 83.0882 | 66 | 15 | 66 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 90.5983 | 66 | 3 | 66 | 0 | 0 | ||
| jmaeng-gatk | SNP | tv | map_siren | hetalt | 88.0000 | 81.4815 | 95.6522 | 83.0882 | 66 | 15 | 66 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.6660 | 81.6092 | 97.0588 | 84.4037 | 71 | 16 | 66 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m2_e0 | het | 97.1014 | 94.3662 | 100.0000 | 86.1635 | 67 | 4 | 66 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l125_m2_e1 | het | 97.1014 | 94.3662 | 100.0000 | 86.4198 | 67 | 4 | 66 | 0 | 0 | ||
| jli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 90.1493 | 66 | 3 | 66 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 44.7458 | 92.9577 | 29.4643 | 46.0241 | 66 | 5 | 66 | 158 | 142 | 89.8734 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 85.2592 | 83.7329 | 86.8421 | 25.4902 | 489 | 95 | 66 | 10 | 10 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 42.3077 | 35.1064 | 53.2258 | 74.8988 | 66 | 122 | 66 | 58 | 49 | 84.4828 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.5075 | 97.0588 | 100.0000 | 69.7248 | 66 | 2 | 66 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 73.3937 | 95.8580 | 59.4595 | 79.8913 | 162 | 7 | 66 | 45 | 45 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.5075 | 98.5075 | 98.5075 | 84.8073 | 66 | 1 | 66 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e0 | het | 95.6522 | 92.9577 | 98.5075 | 89.2456 | 66 | 5 | 66 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e1 | het | 95.6522 | 92.9577 | 98.5075 | 89.4155 | 66 | 5 | 66 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5075 | 98.5075 | 98.5075 | 87.2624 | 66 | 1 | 66 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 97.7778 | 95.6522 | 100.0000 | 89.8305 | 66 | 3 | 66 | 0 | 0 | ||