PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33651-33700 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 44.5902 | 28.6920 | 100.0000 | 33.6634 | 68 | 169 | 67 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e1 | * | 82.0089 | 74.1176 | 91.7808 | 87.5000 | 63 | 22 | 67 | 6 | 5 | 83.3333 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m1_e0 | * | 88.0008 | 80.4598 | 97.1014 | 83.0882 | 70 | 17 | 67 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 94.9526 | 94.2029 | 95.7143 | 65.8537 | 65 | 4 | 67 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m2_e0 | het | 97.8417 | 95.7746 | 100.0000 | 86.7063 | 68 | 3 | 67 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | map_l125_m2_e1 | het | 97.8417 | 95.7746 | 100.0000 | 86.9650 | 68 | 3 | 67 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 84.0961 | 80.3922 | 88.1579 | 92.2449 | 82 | 20 | 67 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 88.5714 | 67 | 0 | 67 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.0492 | 67.3267 | 95.7143 | 92.4812 | 68 | 33 | 67 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m0_e0 | het | 51.5385 | 34.8958 | 98.5294 | 81.9629 | 67 | 125 | 67 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 46.2359 | 35.4839 | 66.3366 | 79.0456 | 66 | 120 | 67 | 34 | 34 | 100.0000 | |
| mlin-fermikit | SNP | * | tech_badpromoters | het | 92.4138 | 87.0130 | 98.5294 | 38.1818 | 67 | 10 | 67 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | tech_badpromoters | * | 93.7063 | 93.0556 | 94.3662 | 43.6508 | 67 | 5 | 67 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_l100_m0_e0 | het | 94.9442 | 98.3333 | 91.7808 | 88.6997 | 59 | 1 | 67 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m2_e1 | * | 36.6856 | 81.4433 | 23.6749 | 89.0986 | 79 | 18 | 67 | 216 | 1 | 0.4630 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_siren | het | 90.0217 | 87.1795 | 93.0556 | 91.7526 | 68 | 10 | 67 | 5 | 3 | 60.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 74.0331 | 94.3662 | 60.9091 | 53.7815 | 67 | 4 | 67 | 43 | 43 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 88.9610 | 67 | 0 | 67 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e0 | * | 82.8213 | 82.9268 | 82.7160 | 93.4835 | 68 | 14 | 67 | 14 | 10 | 71.4286 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 56.5401 | 41.8750 | 87.0130 | 90.2900 | 67 | 93 | 67 | 10 | 3 | 30.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | map_siren | homalt | 83.7500 | 74.4444 | 95.7143 | 85.5372 | 67 | 23 | 67 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 90.3272 | 67 | 0 | 67 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 92.9425 | 91.5612 | 94.3662 | 39.3162 | 217 | 20 | 67 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.3848 | 95.6522 | 89.3333 | 91.3793 | 66 | 3 | 67 | 8 | 4 | 50.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.0355 | 91.7808 | 98.5294 | 72.6908 | 67 | 6 | 67 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 88.5572 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 78.1046 | 67 | 5 | 67 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | func_cds | homalt | 94.3662 | 90.5405 | 98.5294 | 29.8969 | 67 | 7 | 67 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 27.3104 | 23.7037 | 32.2115 | 41.0765 | 32 | 103 | 67 | 141 | 109 | 77.3050 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.7143 | 91.7808 | 100.0000 | 74.1313 | 67 | 6 | 67 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 88.8530 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.2298 | 72.8261 | 97.1014 | 59.1716 | 67 | 25 | 67 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 82.5864 | 71.0843 | 98.5294 | 30.6122 | 59 | 24 | 67 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.0355 | 91.7808 | 98.5294 | 74.4361 | 67 | 6 | 67 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 76.8966 | 67 | 5 | 67 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.7143 | 91.7808 | 100.0000 | 75.0929 | 67 | 6 | 67 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 89.4009 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.0355 | 91.7808 | 98.5294 | 74.2424 | 67 | 6 | 67 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 89.2188 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 70.4663 | 54.4000 | 100.0000 | 33.0000 | 68 | 57 | 67 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | * | 74.4444 | 59.2920 | 100.0000 | 97.1108 | 67 | 46 | 67 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 84.2767 | 81.7073 | 87.0130 | 73.5395 | 67 | 15 | 67 | 10 | 10 | 100.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.7143 | 91.7808 | 100.0000 | 75.0929 | 67 | 6 | 67 | 0 | 0 | ||
| ckim-vqsr | INDEL | D6_15 | map_l125_m2_e0 | het | 94.3662 | 94.3662 | 94.3662 | 94.5636 | 67 | 4 | 67 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m2_e1 | het | 94.3662 | 94.3662 | 94.3662 | 94.6896 | 67 | 4 | 67 | 4 | 1 | 25.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 89.5385 | 67 | 0 | 67 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | * | 79.1409 | 75.8621 | 82.7160 | 87.3635 | 66 | 21 | 67 | 14 | 11 | 78.5714 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 87.7660 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 79.3846 | 67 | 5 | 67 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m0_e0 | homalt | 98.5294 | 100.0000 | 97.1014 | 86.8821 | 67 | 0 | 67 | 2 | 2 | 100.0000 | |