PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33551-33600 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | * | map_l250_m0_e0 | * | 89.4737 | 87.1795 | 91.8919 | 97.7384 | 68 | 10 | 68 | 6 | 1 | 16.6667 | |
| gduggal-bwavard | INDEL | D6_15 | map_l150_m2_e1 | * | 81.5504 | 81.1765 | 81.9277 | 93.4646 | 69 | 16 | 68 | 15 | 11 | 73.3333 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m0_e0 | het | 92.7976 | 90.0000 | 95.7746 | 84.8614 | 54 | 6 | 68 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 87.0010 | 80.6452 | 94.4444 | 79.8319 | 50 | 12 | 68 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 89.4737 | 95.5582 | 0 | 0 | 68 | 8 | 3 | 37.5000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 73.1183 | 95.8464 | 0 | 0 | 68 | 25 | 21 | 84.0000 | |
| gduggal-bwaplat | SNP | * | tech_badpromoters | het | 93.1507 | 88.3117 | 98.5507 | 74.5387 | 68 | 9 | 68 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 99.2701 | 100.0000 | 98.5507 | 78.2334 | 5 | 0 | 68 | 1 | 0 | 0.0000 | |
| qzeng-custom | SNP | tv | tech_badpromoters | * | 93.8212 | 95.8333 | 91.8919 | 51.6340 | 69 | 3 | 68 | 6 | 1 | 16.6667 | |
| mlin-fermikit | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 74.3169 | 66.6667 | 83.9506 | 94.3906 | 68 | 34 | 68 | 13 | 3 | 23.0769 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 99.1597 | 98.3333 | 100.0000 | 88.4157 | 59 | 1 | 68 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | map_l250_m0_e0 | * | 82.9268 | 87.1795 | 79.0698 | 99.4172 | 68 | 10 | 68 | 18 | 1 | 5.5556 | |
| anovak-vg | INDEL | I6_15 | map_siren | het | 45.1108 | 34.9650 | 63.5514 | 79.0607 | 50 | 93 | 68 | 39 | 11 | 28.2051 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 96.4539 | 95.7746 | 97.1429 | 92.7611 | 68 | 3 | 68 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 96.4539 | 95.7746 | 97.1429 | 92.9078 | 68 | 3 | 68 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 70.8155 | 68 | 0 | 68 | 0 | 0 | ||
| astatham-gatk | INDEL | I6_15 | map_siren | hetalt | 97.1429 | 94.4444 | 100.0000 | 78.4810 | 68 | 4 | 68 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | map_l150_m1_e0 | * | 95.0454 | 91.7808 | 98.5507 | 94.0311 | 67 | 6 | 68 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 99.2701 | 98.5507 | 100.0000 | 89.7436 | 68 | 1 | 68 | 0 | 0 | ||
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 38.1138 | 46.0000 | 32.5359 | 39.0671 | 23 | 27 | 68 | 141 | 121 | 85.8156 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m2_e0 | het | 96.4539 | 95.7746 | 97.1429 | 92.6625 | 68 | 3 | 68 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m2_e1 | het | 96.4539 | 95.7746 | 97.1429 | 92.8131 | 68 | 3 | 68 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.5507 | 100.0000 | 97.1429 | 70.3390 | 68 | 0 | 68 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 20.0923 | 11.4118 | 83.9506 | 41.7266 | 97 | 753 | 68 | 13 | 13 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m1_e0 | * | 72.1633 | 71.2329 | 73.1183 | 89.6667 | 52 | 21 | 68 | 25 | 15 | 60.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 13.8244 | 10.6122 | 19.8251 | 85.5882 | 52 | 438 | 68 | 275 | 74 | 26.9091 | |
| gduggal-snapplat | SNP | * | map_siren | hetalt | 87.2768 | 85.1852 | 89.4737 | 79.9472 | 69 | 12 | 68 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | tv | map_siren | hetalt | 87.2768 | 85.1852 | 89.4737 | 79.9472 | 69 | 12 | 68 | 8 | 8 | 100.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 72.3404 | 78.1609 | 67.3267 | 99.9209 | 68 | 19 | 68 | 33 | 18 | 54.5455 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 20.2441 | 11.6279 | 78.1609 | 81.2903 | 70 | 532 | 68 | 19 | 19 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m2_e0 | het | 85.0000 | 95.7746 | 76.4045 | 93.4317 | 68 | 3 | 68 | 21 | 19 | 90.4762 | |
| ghariani-varprowl | INDEL | D6_15 | map_l125_m2_e1 | het | 83.9506 | 95.7746 | 74.7253 | 93.4391 | 68 | 3 | 68 | 23 | 21 | 91.3043 | |
| ghariani-varprowl | INDEL | D6_15 | map_l150_m2_e1 | * | 81.4371 | 80.0000 | 82.9268 | 93.5433 | 68 | 17 | 68 | 14 | 13 | 92.8571 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 39.7661 | 32.2275 | 51.9084 | 77.2174 | 68 | 143 | 68 | 63 | 54 | 85.7143 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 77.6739 | 95.6522 | 65.3846 | 90.8852 | 66 | 3 | 68 | 36 | 17 | 47.2222 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.1049 | 91.8919 | 98.5507 | 79.7654 | 68 | 6 | 68 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 70.6897 | 68 | 0 | 68 | 0 | 0 | ||
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 83.9506 | 73.9130 | 97.1429 | 57.8313 | 68 | 24 | 68 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 83.4015 | 72.2892 | 98.5507 | 28.8660 | 60 | 23 | 68 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e0 | het | 69.8630 | 54.5455 | 97.1429 | 97.2167 | 66 | 55 | 68 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l250_m2_e1 | het | 69.4952 | 54.0984 | 97.1429 | 97.2741 | 66 | 56 | 68 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e1 | * | 74.7253 | 59.6491 | 100.0000 | 97.1536 | 68 | 46 | 68 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 92.8218 | 95.0820 | 90.6667 | 66.3677 | 58 | 3 | 68 | 7 | 6 | 85.7143 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m1_e0 | het | 94.9763 | 96.8750 | 93.1507 | 89.2647 | 62 | 2 | 68 | 5 | 4 | 80.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e0 | het | 96.4539 | 95.7746 | 97.1429 | 92.9435 | 68 | 3 | 68 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m2_e1 | het | 96.4539 | 95.7746 | 97.1429 | 93.0830 | 68 | 3 | 68 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 70.6897 | 68 | 0 | 68 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.7931 | 90.6667 | 97.1429 | 62.7660 | 68 | 7 | 68 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 93.1507 | 90.6667 | 95.7746 | 60.9890 | 68 | 7 | 68 | 3 | 2 | 66.6667 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l125_m2_e0 | het | 97.8417 | 95.7746 | 100.0000 | 90.5556 | 68 | 3 | 68 | 0 | 0 | ||