PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33351-33400 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e0 | het | 64.0842 | 58.6777 | 70.5882 | 97.7293 | 71 | 50 | 72 | 30 | 6 | 20.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e1 | het | 63.2360 | 58.1967 | 69.2308 | 97.7322 | 71 | 51 | 72 | 32 | 6 | 18.7500 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.3077 | 85.7143 | 100.0000 | 60.0000 | 72 | 12 | 72 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 78.2609 | 96.7537 | 0 | 0 | 72 | 20 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 90.0000 | 100.0000 | 81.8182 | 96.5692 | 1 | 0 | 72 | 16 | 8 | 50.0000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m2_e0 | * | 79.4406 | 78.8889 | 80.0000 | 92.4306 | 71 | 19 | 72 | 18 | 9 | 50.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.6394 | 98.6486 | 98.6301 | 79.1429 | 73 | 1 | 72 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 73.1959 | 96.1416 | 0 | 0 | 71 | 26 | 1 | 3.8462 | |
| cchapple-custom | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 73.1959 | 94.5105 | 0 | 0 | 71 | 26 | 14 | 53.8462 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e1 | het | 91.1744 | 90.1639 | 92.2078 | 88.8081 | 55 | 6 | 71 | 6 | 1 | 16.6667 | |
| ckim-dragen | INDEL | D16_PLUS | map_siren | het | 85.1126 | 94.8718 | 77.1739 | 96.1842 | 74 | 4 | 71 | 21 | 1 | 4.7619 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.2603 | 95.9459 | 98.6111 | 80.6971 | 71 | 3 | 71 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.3020 | 94.6667 | 95.9459 | 62.8141 | 71 | 4 | 71 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.6129 | 84.5238 | 100.0000 | 53.8961 | 71 | 13 | 71 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 24.8195 | 14.3396 | 92.2078 | 60.3093 | 76 | 454 | 71 | 6 | 5 | 83.3333 | |
| gduggal-snapplat | SNP | * | tech_badpromoters | het | 91.0256 | 92.2078 | 89.8734 | 77.4286 | 71 | 6 | 71 | 8 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 77.1739 | 94.4910 | 0 | 0 | 71 | 21 | 9 | 42.8571 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 0.0000 | 0.0000 | 77.1739 | 94.4910 | 0 | 0 | 71 | 21 | 9 | 42.8571 | |
| gduggal-snapfb | SNP | tv | tech_badpromoters | * | 90.4459 | 98.6111 | 83.5294 | 68.8645 | 71 | 1 | 71 | 14 | 1 | 7.1429 | |
| gduggal-snapplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 43.7439 | 31.3305 | 72.4490 | 90.3733 | 73 | 160 | 71 | 27 | 10 | 37.0370 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 32.7668 | 34.5725 | 31.1404 | 85.7143 | 93 | 176 | 71 | 157 | 40 | 25.4777 | |
| ghariani-varprowl | SNP | tv | tech_badpromoters | * | 96.5986 | 98.6111 | 94.6667 | 59.4595 | 71 | 1 | 71 | 4 | 1 | 25.0000 | |
| ndellapenna-hhga | SNP | tv | tech_badpromoters | * | 96.5986 | 98.6111 | 94.6667 | 54.5455 | 71 | 1 | 71 | 4 | 1 | 25.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m1_e0 | * | 99.3103 | 98.6301 | 100.0000 | 87.8840 | 72 | 1 | 71 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 91.6129 | 85.5422 | 98.6111 | 44.6154 | 71 | 12 | 71 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | tech_badpromoters | * | 94.6667 | 93.4211 | 95.9459 | 50.0000 | 71 | 5 | 71 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l150_m1_e0 | * | 98.6111 | 97.2603 | 100.0000 | 90.0421 | 71 | 2 | 71 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | tech_badpromoters | * | 98.6111 | 98.6111 | 98.6111 | 50.0000 | 71 | 1 | 71 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.9310 | 95.9459 | 100.0000 | 80.5479 | 71 | 3 | 71 | 0 | 0 | ||
| jlack-gatk | SNP | tv | tech_badpromoters | * | 96.5986 | 98.6111 | 94.6667 | 52.8302 | 71 | 1 | 71 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_siren | het | 91.1204 | 94.8718 | 87.6543 | 94.8375 | 74 | 4 | 71 | 10 | 1 | 10.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 97.9310 | 95.9459 | 100.0000 | 81.4136 | 71 | 3 | 71 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | tech_badpromoters | * | 99.3007 | 98.6111 | 100.0000 | 49.6454 | 71 | 1 | 71 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | tech_badpromoters | * | 99.3007 | 98.6111 | 100.0000 | 48.9209 | 71 | 1 | 71 | 0 | 0 | ||
| jlack-gatk | INDEL | D6_15 | map_l150_m1_e0 | * | 93.4211 | 97.2603 | 89.8734 | 93.5668 | 71 | 2 | 71 | 8 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 32.7901 | 97.1831 | 19.7222 | 22.4138 | 69 | 2 | 71 | 289 | 266 | 92.0415 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m0_e0 | * | 95.1569 | 95.6522 | 94.6667 | 96.8867 | 44 | 2 | 71 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m1_e0 | het | 93.2430 | 96.8750 | 89.8734 | 86.2609 | 62 | 2 | 71 | 8 | 8 | 100.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 78.0863 | 74.0741 | 82.5581 | 65.0407 | 60 | 21 | 71 | 15 | 14 | 93.3333 | |
| gduggal-bwaplat | INDEL | I6_15 | map_l100_m1_e0 | * | 76.7568 | 62.2807 | 100.0000 | 92.9703 | 71 | 43 | 71 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | map_l125_m2_e0 | het | 85.5348 | 98.5915 | 75.5319 | 93.2325 | 70 | 1 | 71 | 23 | 16 | 69.5652 | |
| gduggal-bwavard | INDEL | D6_15 | map_l125_m2_e1 | het | 85.0227 | 98.5915 | 74.7368 | 93.3287 | 70 | 1 | 71 | 24 | 17 | 70.8333 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 53.5912 | 38.5935 | 87.6543 | 68.1102 | 225 | 358 | 71 | 10 | 10 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_siren | hetalt | 66.5492 | 57.0850 | 79.7753 | 93.0196 | 141 | 106 | 71 | 18 | 14 | 77.7778 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m1_e0 | * | 58.6777 | 41.5205 | 100.0000 | 98.7278 | 71 | 100 | 71 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | tv | tech_badpromoters | * | 95.9459 | 98.6111 | 93.4211 | 57.0621 | 71 | 1 | 71 | 5 | 0 | 0.0000 | |
| jli-custom | INDEL | D16_PLUS | map_siren | het | 96.0512 | 94.8718 | 97.2603 | 93.9167 | 74 | 4 | 71 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.3020 | 94.6667 | 95.9459 | 58.6592 | 71 | 4 | 71 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.3082 | 81.6092 | 98.6111 | 83.0588 | 71 | 16 | 71 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 84.0237 | 77.1739 | 92.2078 | 54.4379 | 71 | 21 | 71 | 6 | 4 | 66.6667 | |