PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33201-33250 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 32.7273 | 74 | 0 | 74 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_siren | hetalt | 93.6709 | 88.0952 | 100.0000 | 91.2218 | 74 | 10 | 74 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.3810 | 74 | 0 | 74 | 0 | 0 | ||
| cchapple-custom | INDEL | * | map_l250_m0_e0 | * | 92.5000 | 94.8718 | 90.2439 | 97.6565 | 74 | 4 | 74 | 8 | 0 | 0.0000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 82.2222 | 96.5701 | 0 | 0 | 74 | 16 | 6 | 37.5000 | |
| cchapple-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 82.2222 | 96.5701 | 0 | 0 | 74 | 16 | 6 | 37.5000 | |
| cchapple-custom | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 21.2766 | 74 | 0 | 74 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | map_l150_m1_e0 | * | 94.6958 | 94.5205 | 94.8718 | 90.3822 | 69 | 4 | 74 | 4 | 2 | 50.0000 | |
| ckim-isaac | INDEL | * | map_l100_m2_e0 | hetalt | 75.0774 | 61.6000 | 96.1039 | 86.5854 | 77 | 48 | 74 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.5238 | 74 | 0 | 74 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 81.0742 | 74 | 0 | 74 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 94.4528 | 1 | 0 | 74 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 45.2330 | 51.6779 | 40.2174 | 66.9659 | 77 | 72 | 74 | 110 | 110 | 100.0000 | |
| jpowers-varprowl | SNP | * | tech_badpromoters | het | 91.9255 | 96.1039 | 88.0952 | 62.9956 | 74 | 3 | 74 | 10 | 1 | 10.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 94.8718 | 94.2605 | 0 | 0 | 74 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 94.8718 | 94.2605 | 0 | 0 | 74 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 83.8710 | 72.2222 | 100.0000 | 64.4231 | 78 | 30 | 74 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 91.4483 | 86.2069 | 97.3684 | 99.9056 | 75 | 12 | 74 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.2887 | 100.0000 | 61.6667 | 83.5391 | 169 | 0 | 74 | 46 | 45 | 97.8261 | |
| jmaeng-gatk | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 33.9286 | 74 | 0 | 74 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.0388 | 74 | 0 | 74 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | tech_badpromoters | het | 98.0132 | 96.1039 | 100.0000 | 48.2517 | 74 | 3 | 74 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_siren | hetalt | 92.9936 | 86.9048 | 100.0000 | 91.3507 | 73 | 11 | 73 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.0244 | 83.9080 | 94.8052 | 84.8425 | 73 | 14 | 73 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.9936 | 86.9048 | 100.0000 | 53.7975 | 73 | 11 | 73 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.8052 | 90.1235 | 100.0000 | 75.4209 | 73 | 8 | 73 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 90.3389 | 86.2745 | 94.8052 | 93.0880 | 88 | 14 | 73 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 89.8734 | 81.6092 | 100.0000 | 99.8937 | 71 | 16 | 73 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 96.0526 | 95.1868 | 0 | 0 | 73 | 3 | 2 | 66.6667 | |
| jmaeng-gatk | INDEL | * | map_l250_m0_e0 | * | 87.9518 | 93.5897 | 82.9545 | 98.5586 | 73 | 5 | 73 | 15 | 2 | 13.3333 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 94.4147 | 1 | 0 | 73 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | func_cds | homalt | 99.3197 | 98.6486 | 100.0000 | 23.1579 | 73 | 1 | 73 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.2603 | 94.6667 | 100.0000 | 64.9038 | 71 | 4 | 73 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 78.4024 | 74 | 0 | 73 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 37.3402 | 48.0263 | 30.5439 | 97.0255 | 73 | 79 | 73 | 166 | 10 | 6.0241 | |
| ghariani-varprowl | INDEL | * | map_l250_m0_e0 | * | 80.6630 | 93.5897 | 70.8738 | 98.9454 | 73 | 5 | 73 | 30 | 3 | 10.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 66.6667 | 76.8421 | 58.8710 | 85.4801 | 73 | 22 | 73 | 51 | 49 | 96.0784 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 63.8406 | 59.0164 | 69.5238 | 78.0335 | 72 | 50 | 73 | 32 | 31 | 96.8750 | |
| gduggal-snapvard | INDEL | I6_15 | map_l125_m1_e0 | het | 65.6975 | 86.6667 | 52.8986 | 82.1244 | 26 | 4 | 73 | 65 | 50 | 76.9231 | |
| ndellapenna-hhga | INDEL | * | tech_badpromoters | * | 97.3333 | 96.0526 | 98.6486 | 91.8051 | 73 | 3 | 73 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | * | 83.6913 | 81.6092 | 85.8824 | 87.5549 | 71 | 16 | 73 | 12 | 6 | 50.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 96.6887 | 98.6486 | 94.8052 | 81.8396 | 73 | 1 | 73 | 4 | 3 | 75.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 96.0526 | 95.1868 | 0 | 0 | 73 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_siren | het | 96.7234 | 94.8718 | 98.6486 | 85.2883 | 74 | 4 | 73 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | func_cds | homalt | 99.3197 | 98.6486 | 100.0000 | 20.6522 | 73 | 1 | 73 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 77.4691 | 74 | 0 | 73 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l250_m0_e0 | * | 91.8239 | 93.5897 | 90.1235 | 97.0513 | 73 | 5 | 73 | 8 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 86.0260 | 77.8947 | 96.0526 | 86.8056 | 74 | 21 | 73 | 3 | 1 | 33.3333 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.9936 | 86.9048 | 100.0000 | 63.1313 | 73 | 11 | 73 | 0 | 0 | ||
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 83.4286 | 71.5686 | 100.0000 | 93.4470 | 73 | 29 | 73 | 0 | 0 | ||