PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33051-33100 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I6_15 | map_l100_m1_e0 | * | 72.3810 | 66.6667 | 79.1667 | 87.9093 | 76 | 38 | 76 | 20 | 16 | 80.0000 | |
| ghariani-varprowl | SNP | * | tech_badpromoters | het | 95.0000 | 98.7013 | 91.5663 | 57.6531 | 76 | 1 | 76 | 7 | 1 | 14.2857 | |
| gduggal-snapfb | SNP | * | tech_badpromoters | het | 89.4118 | 98.7013 | 81.7204 | 64.3678 | 76 | 1 | 76 | 17 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m0_e0 | * | 74.8768 | 73.7864 | 76.0000 | 91.3420 | 76 | 27 | 76 | 24 | 21 | 87.5000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e1 | homalt | 96.8153 | 95.0000 | 98.7013 | 92.1026 | 57 | 3 | 76 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l250_m1_e0 | * | 77.9487 | 71.6981 | 85.3933 | 98.3386 | 76 | 30 | 76 | 13 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.2025 | 93.8272 | 98.7013 | 77.3529 | 76 | 5 | 76 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | tech_badpromoters | * | 98.7013 | 100.0000 | 97.4359 | 53.2934 | 76 | 0 | 76 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | map_siren | hetalt | 95.0000 | 90.4762 | 100.0000 | 90.7543 | 76 | 8 | 76 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | * | map_l250_m0_e0 | * | 93.2515 | 97.4359 | 89.4118 | 97.2159 | 76 | 2 | 76 | 9 | 2 | 22.2222 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.2025 | 93.8272 | 98.7013 | 76.2346 | 76 | 5 | 76 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 84.4444 | 78.3505 | 91.5663 | 89.1503 | 76 | 21 | 76 | 7 | 3 | 42.8571 | |
| rpoplin-dv42 | INDEL | I16_PLUS | map_siren | * | 91.4854 | 87.2093 | 96.2025 | 77.4929 | 75 | 11 | 76 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 92.1212 | 93.8272 | 90.4762 | 75.3666 | 76 | 5 | 76 | 8 | 7 | 87.5000 | |
| rpoplin-dv42 | SNP | * | tech_badpromoters | het | 98.7013 | 98.7013 | 98.7013 | 42.1053 | 76 | 1 | 76 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 100.0000 | 95.9052 | 0 | 0 | 76 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.4762 | 60.4839 | 73.7864 | 99.9217 | 75 | 49 | 76 | 27 | 19 | 70.3704 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 21.4797 | 14.7388 | 39.5833 | 70.4160 | 79 | 457 | 76 | 116 | 116 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | map_l250_m2_e1 | * | 59.7641 | 63.1579 | 56.7164 | 96.7476 | 72 | 42 | 76 | 58 | 33 | 56.8966 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 89.7542 | 85.0575 | 95.0000 | 99.9024 | 74 | 13 | 76 | 4 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | map_l250_m0_e0 | homalt | 29.6875 | 17.4312 | 100.0000 | 98.3895 | 76 | 360 | 76 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D1_5 | map_l150_m0_e0 | homalt | 92.6076 | 88.2353 | 97.4359 | 91.4191 | 75 | 10 | 76 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 94.9446 | 91.4634 | 98.7013 | 94.0310 | 75 | 7 | 76 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 87.2093 | 86.2069 | 88.2353 | 95.4955 | 75 | 12 | 75 | 10 | 3 | 30.0000 | |
| asubramanian-gatk | SNP | * | tech_badpromoters | het | 98.6842 | 97.4026 | 100.0000 | 51.9231 | 75 | 2 | 75 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l250_m2_e0 | * | 59.4374 | 62.8319 | 56.3910 | 96.6841 | 71 | 42 | 75 | 58 | 33 | 56.8966 | |
| astatham-gatk | INDEL | * | map_l250_m0_e0 | * | 90.3614 | 96.1538 | 85.2273 | 97.7873 | 75 | 3 | 75 | 13 | 2 | 15.3846 | |
| astatham-gatk | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 55.0898 | 75 | 1 | 75 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 54.5455 | 75 | 1 | 75 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e0 | homalt | 96.8071 | 95.0000 | 98.6842 | 92.0000 | 57 | 3 | 75 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 50.5051 | 47.7707 | 53.5714 | 69.8925 | 75 | 82 | 75 | 65 | 61 | 93.8462 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_siren | het | 72.0679 | 93.5897 | 58.5938 | 93.8343 | 73 | 5 | 75 | 53 | 38 | 71.6981 | |
| ndellapenna-hhga | INDEL | * | map_l250_m0_e0 | * | 93.7500 | 96.1538 | 91.4634 | 99.7895 | 75 | 3 | 75 | 7 | 1 | 14.2857 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | * | 83.1183 | 81.1111 | 85.2273 | 88.2353 | 73 | 17 | 75 | 13 | 6 | 46.1538 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 83.1234 | 93.2203 | 75.0000 | 71.9101 | 55 | 4 | 75 | 25 | 18 | 72.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 96.1538 | 94.3437 | 0 | 0 | 75 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m2_e1 | * | 87.4735 | 79.3814 | 97.4026 | 83.5118 | 77 | 20 | 75 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.5670 | 91.8919 | 97.4026 | 86.9492 | 68 | 6 | 75 | 2 | 2 | 100.0000 | |
| qzeng-custom | INDEL | * | map_l250_m0_e0 | * | 73.8916 | 64.1026 | 87.2093 | 99.0927 | 50 | 28 | 75 | 11 | 6 | 54.5455 | |
| ckim-vqsr | SNP | * | tech_badpromoters | het | 98.6842 | 97.4026 | 100.0000 | 50.9804 | 75 | 2 | 75 | 0 | 0 | ||
| dgrover-gatk | SNP | * | tech_badpromoters | het | 98.6842 | 97.4026 | 100.0000 | 51.9231 | 75 | 2 | 75 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 72.1154 | 94.9392 | 0 | 0 | 75 | 29 | 27 | 93.1034 | |
| egarrison-hhga | INDEL | * | tech_badpromoters | * | 98.6842 | 98.6842 | 98.6842 | 91.7481 | 75 | 1 | 75 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | * | 79.6555 | 76.2887 | 83.3333 | 87.4652 | 74 | 23 | 75 | 15 | 11 | 73.3333 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m2_e0 | het | 95.4357 | 97.1831 | 93.7500 | 89.2905 | 69 | 2 | 75 | 5 | 4 | 80.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l125_m2_e1 | het | 95.4357 | 97.1831 | 93.7500 | 89.5288 | 69 | 2 | 75 | 5 | 4 | 80.0000 | |
| dgrover-gatk | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 55.0898 | 75 | 1 | 75 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 60.8295 | 43.7086 | 100.0000 | 34.7826 | 66 | 85 | 75 | 0 | 0 | ||
| ckim-vqsr | INDEL | * | map_l250_m0_e0 | * | 87.2093 | 96.1538 | 79.7872 | 98.4545 | 75 | 3 | 75 | 19 | 1 | 5.2632 | |
| ckim-vqsr | INDEL | * | tech_badpromoters | * | 99.3377 | 98.6842 | 100.0000 | 54.8193 | 75 | 1 | 75 | 0 | 0 | ||