PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
3251-3300 / 86044 show all
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.1412
97.5428
98.7469
41.4519
2393760323956304264
86.8421
hfeng-pmm2INDEL**hetalt
96.9055
94.0484
99.9416
58.8044
237351502239541412
85.7143
bgallagher-sentieonINDELI6_15**
97.2604
96.4589
98.0753
52.5522
2394487923949470434
92.3404
ckim-dragenINDELI6_15**
97.2249
96.4630
97.9990
52.8733
2394587823949489448
91.6155
jpowers-varprowlSNPtvmap_l100_m1_e0*
97.6764
97.6246
97.7283
72.0238
2391958223919556138
24.8201
ckim-gatkSNP*map_l125_m2_e0het
88.5829
81.5915
96.8846
87.2138
2392153972391576955
7.1522
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.5102
97.4083
99.6374
38.9351
23904636239068770
80.4598
jmaeng-gatkSNP*map_l125_m2_e0het
88.4835
81.5574
96.6953
87.4762
2391154072390581751
6.2424
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.4896
97.3839
99.6207
39.3186
23898642239009186
94.5055
hfeng-pmm3INDEL**hetalt
96.7703
93.7869
99.9498
57.3944
236691568238941210
83.3333
ckim-isaacINDEL*HG002complexvarhomalt
93.1685
88.5818
98.2561
47.1228
23941308623890424132
31.1321
ciseli-customSNPtimap_l125_m2_e1*
82.1337
78.2100
86.4719
77.2907
239086661238873737990
26.4918
gduggal-bwavardSNPtvmap_l100_m1_e0*
95.8710
97.8083
94.0091
75.1618
2396453723883152297
6.3732
ltrigg-rtg2INDEL*HG002compoundhethetalt
97.1901
94.8491
99.6495
57.3566
238831297238828483
98.8095
astatham-gatkSNPtimap_l100_m2_e1het
87.0268
77.1576
99.7911
74.6941
238887072238815023
46.0000
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.4716
97.2738
99.6993
39.0402
23871669238737265
90.2778
dgrover-gatkINDEL*HG002compoundhethetalt
96.9439
94.2772
99.7659
51.7927
237391441238635655
98.2143
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.1088
97.1353
99.1021
39.2213
2383770323839216207
95.8333
gduggal-bwaplatSNPtimap_l100_m2_e0het
87.1494
77.7546
99.1265
83.6970
2381068122383221063
30.0000
jli-customINDEL**hetalt
96.4996
93.5214
99.6737
57.4952
236021635238257876
97.4359
gduggal-snapplatINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
90.7450
84.0340
98.6211
62.7612
2374845122381633353
15.9159
astatham-gatkINDEL*HG002compoundhethetalt
96.8345
94.0747
99.7612
51.5025
236881492238125756
98.2456
ltrigg-rtg2INDELI6_15**
98.2993
97.1961
99.4278
44.2481
241276962380413783
60.5839
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
97.6511
96.9845
98.3269
41.1237
2380074023802405370
91.3580
hfeng-pmm1INDEL*HG002compoundhethetalt
96.9242
94.0469
99.9832
52.2156
2368114992379643
75.0000
hfeng-pmm2INDEL*HG002compoundhethetalt
96.9221
94.0429
99.9832
52.1234
2368015002379542
50.0000
mlin-fermikitSNP*HG002compoundhet*
92.7673
91.9758
93.5725
42.5829
2375020722375916321332
81.6176
ciseli-customSNP*map_l150_m2_e1*
78.3942
73.8684
83.5109
81.5923
2379384172375346901163
24.7974
hfeng-pmm3INDEL*HG002compoundhethetalt
96.7848
93.7847
99.9831
50.6733
2361515652373142
50.0000
ndellapenna-hhgaINDELI6_15**
96.5902
95.4921
97.7138
48.4477
23704111923721555427
76.9369
asubramanian-gatkINDELI6_15**
96.7639
95.5082
98.0531
53.5929
23708111523721471428
90.8705
ndellapenna-hhgaINDEL*HG002compoundhet*
77.5493
76.6121
78.5097
71.2626
2295370072371764926061
93.3611
ltrigg-rtg1INDEL**hetalt
95.1862
91.1955
99.5422
68.0582
23015222223702109107
98.1651
egarrison-hhgaINDELI6_15**
96.6680
95.4155
97.9538
47.3697
23685113823696495388
78.3838
ciseli-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
92.6865
93.7182
91.6773
55.0764
2376615932369421511318
61.2738
mlin-fermikitSNP*map_l125_m2_e1*
63.8417
50.2034
87.6540
61.8934
23697235052369233372934
87.9233
raldana-dualsentieonINDELI6_15**
96.8613
95.4115
98.3558
49.7486
23684113923689396375
94.6970
gduggal-snapvardSNPtvmap_l100_m1_e0*
94.4568
97.0001
92.0434
74.6951
23766735236802047149
7.2789
jli-customINDEL*HG002compoundhethetalt
96.5598
93.5624
99.7556
52.2097
235591621236785857
98.2759
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.0853
96.5607
99.6588
36.0406
23696844236628158
71.6049
jlack-gatkINDELI6_15**
96.1308
95.2745
97.0025
53.1865
23650117323656731625
85.4993
jmaeng-gatkSNP*map_l100_m0_e0*
82.8475
71.9345
97.6638
84.1509
2362492172362056548
8.4956
ciseli-customSNPtimap_l125_m2_e0*
82.0578
78.1149
86.4200
77.2839
236366622236163711984
26.5158
ckim-gatkSNP*map_l100_m0_e0*
82.8691
71.9040
97.7802
83.9171
2361492272361053648
8.9552
asubramanian-gatkINDEL**hetalt
95.6373
92.5665
98.9188
59.3274
23361187623605258236
91.4729
astatham-gatkSNPtimap_l100_m2_e0het
86.9897
77.0982
99.7928
74.7072
236097013236024923
46.9388
gduggal-snapplatSNPtvmap_l100_m2_e1*
94.9238
93.3394
96.5629
79.3964
23599168423599840407
48.4524
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
94.6807
90.9033
98.7857
42.8578
11382113923592290233
80.3448
gduggal-bwaplatINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
83.5790
73.7247
96.4741
64.8422
23586840623586862511
59.2807
bgallagher-sentieonINDEL**hetalt
95.9976
92.5387
99.7251
56.9311
233541883235826564
98.4615