PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32701-32750 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m2_e0 | * | 98.1818 | 98.7805 | 97.5904 | 92.7320 | 81 | 1 | 81 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | segdup | het | 98.1818 | 97.5904 | 98.7805 | 93.7690 | 81 | 2 | 81 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m1_e0 | * | 81.3037 | 72.8070 | 92.0455 | 76.5957 | 83 | 31 | 81 | 7 | 6 | 85.7143 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 31.8050 | 60.7407 | 21.5426 | 49.5302 | 82 | 53 | 81 | 295 | 292 | 98.9831 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 40.9756 | 28.1879 | 75.0000 | 50.6849 | 42 | 107 | 81 | 27 | 27 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 69.4864 | 63.7097 | 76.4151 | 99.9162 | 79 | 45 | 81 | 25 | 24 | 96.0000 | |
| mlin-fermikit | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 50.0731 | 34.1014 | 94.1860 | 56.1224 | 74 | 143 | 81 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.2456 | 96.5517 | 100.0000 | 71.8750 | 84 | 3 | 81 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.0060 | 95.2941 | 98.7805 | 84.6154 | 81 | 4 | 81 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | D6_15 | map_l150_m2_e1 | * | 98.8095 | 97.6471 | 100.0000 | 87.6900 | 83 | 2 | 81 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3927 | 94.1176 | 98.7805 | 57.2917 | 80 | 5 | 81 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.2451 | 91.9540 | 98.7805 | 77.4105 | 80 | 7 | 81 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | * | 83.7401 | 81.4433 | 86.1702 | 87.8866 | 79 | 18 | 81 | 13 | 6 | 46.1538 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 85.1171 | 86.7925 | 83.5052 | 83.2470 | 92 | 14 | 81 | 16 | 9 | 56.2500 | |
| ckim-vqsr | INDEL | I6_15 | segdup | het | 98.1818 | 97.5904 | 98.7805 | 95.4267 | 81 | 2 | 81 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.2451 | 91.9540 | 98.7805 | 76.3006 | 80 | 7 | 81 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | map_l150_m2_e1 | * | 94.6528 | 92.9412 | 96.4286 | 90.6770 | 79 | 6 | 81 | 3 | 3 | 100.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3927 | 94.1176 | 98.7805 | 56.1497 | 80 | 5 | 81 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_siren | hetalt | 85.4934 | 76.7857 | 96.4286 | 82.2410 | 86 | 26 | 81 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l125_m2_e1 | * | 77.5120 | 63.2812 | 100.0000 | 95.9008 | 81 | 47 | 81 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m1_e0 | homalt | 58.0645 | 40.9091 | 100.0000 | 94.7641 | 81 | 117 | 81 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 60.7839 | 44.6237 | 95.2941 | 48.1707 | 83 | 103 | 81 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m1_e0 | homalt | 97.3286 | 98.2456 | 96.4286 | 95.0059 | 56 | 1 | 81 | 3 | 3 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 19.3536 | 10.8571 | 89.0110 | 49.7238 | 19 | 156 | 81 | 10 | 10 | 100.0000 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 80.3116 | 70.0000 | 94.1860 | 83.6812 | 42 | 18 | 81 | 5 | 4 | 80.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 57.3067 | 82.0755 | 44.0217 | 76.7383 | 87 | 19 | 81 | 103 | 93 | 90.2913 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l250_m2_e1 | * | 60.9023 | 43.7838 | 100.0000 | 98.7465 | 81 | 104 | 81 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 97.0060 | 98.7805 | 95.2941 | 94.2138 | 81 | 1 | 81 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | segdup | het | 97.0060 | 97.5904 | 96.4286 | 95.3203 | 81 | 2 | 81 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e1 | * | 96.4286 | 95.2941 | 97.5904 | 93.1800 | 81 | 4 | 81 | 2 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D6_15 | segdup | het | 78.3734 | 80.4348 | 76.4151 | 94.8494 | 74 | 18 | 81 | 25 | 8 | 32.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.1463 | 87.3563 | 91.0112 | 82.7519 | 76 | 11 | 81 | 8 | 7 | 87.5000 | |
| ciseli-custom | INDEL | C1_5 | * | het | 47.4725 | 44.4444 | 50.9434 | 97.6237 | 4 | 5 | 81 | 78 | 5 | 6.4103 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 94.2194 | 94.2529 | 94.1860 | 99.8927 | 82 | 5 | 81 | 5 | 0 | 0.0000 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 25.3240 | 74.5098 | 15.2542 | 84.3039 | 76 | 26 | 81 | 450 | 7 | 1.5556 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 17.9562 | 55.4054 | 10.7143 | 41.9355 | 82 | 66 | 81 | 675 | 674 | 99.8519 | |
| jpowers-varprowl | INDEL | D6_15 | segdup | het | 74.3119 | 88.0435 | 64.2857 | 94.1066 | 81 | 11 | 81 | 45 | 45 | 100.0000 | |
| jli-custom | INDEL | I6_15 | segdup | het | 98.7805 | 97.5904 | 100.0000 | 92.5346 | 81 | 2 | 81 | 0 | 0 | ||
| jli-custom | INDEL | D6_15 | map_l150_m2_e0 | * | 99.3865 | 98.7805 | 100.0000 | 91.1281 | 81 | 1 | 81 | 0 | 0 | ||
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.4901 | 95.1220 | 90.0000 | 74.9304 | 78 | 4 | 81 | 9 | 9 | 100.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.9697 | 94.1176 | 100.0000 | 53.1792 | 80 | 5 | 81 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 98.1818 | 98.7805 | 97.5904 | 94.2640 | 81 | 1 | 81 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.1677 | 87.2093 | 100.0000 | 76.7908 | 75 | 11 | 81 | 0 | 0 | ||
| ltrigg-rtg1 | SNP | * | map_siren | hetalt | 98.7805 | 100.0000 | 97.5904 | 66.8000 | 81 | 0 | 81 | 2 | 2 | 100.0000 | |
| ltrigg-rtg1 | SNP | tv | map_siren | hetalt | 98.7805 | 100.0000 | 97.5904 | 66.8000 | 81 | 0 | 81 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 100.0000 | 94.8143 | 0 | 0 | 81 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | D6_15 | map_l150_m2_e0 | * | 99.3865 | 98.7805 | 100.0000 | 90.8989 | 81 | 1 | 81 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.4891 | 91.5789 | 97.5904 | 89.8284 | 87 | 8 | 81 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I6_15 | segdup | het | 94.1860 | 97.5904 | 91.0112 | 95.1419 | 81 | 2 | 81 | 8 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.9412 | 91.5789 | 96.4286 | 90.0119 | 87 | 8 | 81 | 3 | 0 | 0.0000 | |