PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32551-32600 / 86044 show all | |||||||||||||||
| qzeng-custom | SNP | ti | tech_badpromoters | * | 99.4083 | 100.0000 | 98.8235 | 44.4444 | 85 | 0 | 84 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 96.5517 | 94.3820 | 98.8235 | 71.3805 | 84 | 5 | 84 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.8235 | 98.8235 | 98.8235 | 89.0886 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | I16_PLUS | map_siren | * | 94.8959 | 96.5116 | 93.3333 | 92.9961 | 83 | 3 | 84 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.8235 | 98.8235 | 98.8235 | 89.2812 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D1_5 | func_cds | het | 93.3333 | 98.8235 | 88.4211 | 41.7178 | 84 | 1 | 84 | 11 | 10 | 90.9091 | |
| jli-custom | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 44.4444 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 54.9992 | 39.3519 | 91.3043 | 52.3316 | 85 | 131 | 84 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m2_e1 | homalt | 81.2379 | 68.9655 | 98.8235 | 97.2835 | 80 | 36 | 84 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e1 | * | 72.3984 | 71.7647 | 73.0435 | 88.8023 | 61 | 24 | 84 | 31 | 20 | 64.5161 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 43.9926 | 38.2022 | 51.8519 | 68.8462 | 68 | 110 | 84 | 78 | 56 | 71.7949 | |
| gduggal-snapfb | INDEL | D1_5 | func_cds | het | 98.2456 | 98.8235 | 97.6744 | 47.5610 | 84 | 1 | 84 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | SNP | ti | tech_badpromoters | * | 96.5517 | 98.8235 | 94.3820 | 48.8506 | 84 | 1 | 84 | 5 | 1 | 20.0000 | |
| gduggal-snapplat | INDEL | D1_5 | func_cds | homalt | 91.9708 | 85.1351 | 100.0000 | 31.1475 | 63 | 11 | 84 | 0 | 0 | ||
| rpoplin-dv42 | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 45.1613 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| ckim-vqsr | INDEL | I16_PLUS | map_siren | * | 97.0895 | 96.5116 | 97.6744 | 93.2230 | 83 | 3 | 84 | 2 | 0 | 0.0000 | |
| dgrover-gatk | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 45.5128 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| ckim-vqsr | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 44.8052 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 87.5000 | 86.5979 | 88.4211 | 95.7342 | 84 | 13 | 84 | 11 | 3 | 27.2727 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_siren | * | 94.8959 | 96.5116 | 93.3333 | 92.5926 | 83 | 3 | 84 | 6 | 1 | 16.6667 | |
| asubramanian-gatk | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 45.1613 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 44.8052 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | tv | map_l250_m0_e0 | homalt | 60.6498 | 43.5233 | 100.0000 | 96.8563 | 84 | 109 | 84 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 49.2669 | 36.3636 | 76.3636 | 65.9443 | 88 | 154 | 84 | 26 | 25 | 96.1538 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.2565 | 96.8421 | 97.6744 | 90.7527 | 92 | 3 | 84 | 2 | 0 | 0.0000 | |
| ckim-dragen | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 42.5676 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.5517 | 96.5517 | 96.5517 | 80.4494 | 84 | 3 | 84 | 3 | 1 | 33.3333 | |
| cchapple-custom | INDEL | D6_15 | map_l150_m2_e0 | * | 95.2619 | 95.1220 | 95.4023 | 90.4185 | 78 | 4 | 83 | 4 | 2 | 50.0000 | |
| ciseli-custom | INDEL | D1_5 | func_cds | het | 88.2979 | 97.6471 | 80.5825 | 43.4066 | 83 | 2 | 83 | 20 | 4 | 20.0000 | |
| ckim-gatk | INDEL | D6_15 | map_l150_m2_e1 | * | 96.5116 | 97.6471 | 95.4023 | 94.2039 | 83 | 2 | 83 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.1677 | 87.2093 | 100.0000 | 76.4205 | 75 | 11 | 83 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.7297 | 92.2222 | 87.3684 | 95.8533 | 83 | 7 | 83 | 12 | 4 | 33.3333 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.2249 | 97.6471 | 98.8095 | 90.0238 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.2036 | 96.4706 | 100.0000 | 57.8680 | 82 | 3 | 83 | 0 | 0 | ||
| gduggal-snapplat | INDEL | I1_5 | map_l250_m2_e1 | * | 79.0476 | 72.8070 | 86.4583 | 98.4991 | 83 | 31 | 83 | 13 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l250_m2_e0 | homalt | 81.0457 | 68.6957 | 98.8095 | 97.2495 | 79 | 36 | 83 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_l150_m2_e0 | * | 72.9884 | 73.1707 | 72.8070 | 88.6680 | 60 | 22 | 83 | 31 | 20 | 64.5161 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 13.0281 | 7.0388 | 87.3684 | 61.2245 | 58 | 766 | 83 | 12 | 11 | 91.6667 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 13.0281 | 7.0388 | 87.3684 | 61.2245 | 58 | 766 | 83 | 12 | 11 | 91.6667 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 81.9978 | 81.8182 | 82.1782 | 94.8258 | 90 | 20 | 83 | 18 | 6 | 33.3333 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.0553 | 96.4706 | 97.6471 | 94.1661 | 82 | 3 | 83 | 2 | 2 | 100.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 92.7374 | 90.2174 | 95.4023 | 68.7050 | 83 | 9 | 83 | 4 | 3 | 75.0000 | |
| qzeng-custom | INDEL | D1_5 | func_cds | het | 98.2249 | 100.0000 | 96.5116 | 50.0000 | 85 | 0 | 83 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 92.5939 | 86.2091 | 100.0000 | 89.7909 | 8014 | 1282 | 83 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | map_l150_m2_e1 | * | 84.3557 | 82.3529 | 86.4583 | 93.8184 | 70 | 15 | 83 | 13 | 6 | 46.1538 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.8706 | 95.2381 | 96.5116 | 64.1667 | 80 | 4 | 83 | 3 | 3 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l150_m0_e0 | homalt | 98.8095 | 97.6471 | 100.0000 | 89.8904 | 83 | 2 | 83 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.7297 | 92.2222 | 87.3684 | 93.0250 | 83 | 7 | 83 | 12 | 2 | 16.6667 | |
| hfeng-pmm1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.4785 | 89.5349 | 100.0000 | 77.9841 | 77 | 9 | 83 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I16_PLUS | map_siren | * | 94.8307 | 95.3488 | 94.3182 | 91.7987 | 82 | 4 | 83 | 5 | 1 | 20.0000 | |