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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 642 643 644 645 646 647 648 649 650 ... 1720 1721 » 32251-32300 / 86044 show all
mlin-fermikit	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	87.8850	84.2593	91.8367	77.9775	91	17	90	8	8	100.0000
mlin-fermikit	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	80.7834	70.9677	93.7500	90.7514	88	36	90	6	2	33.3333
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt	96.2567	92.7835	100.0000	23.7288	90	7	90	0	0
ltrigg-rtg1	INDEL	D6_15	map_siren	hetalt	96.3564	93.9394	98.9011	80.3456	93	6	90	1	1	100.0000
gduggal-snapplat	INDEL	D1_5	func_cds	het	81.7516	78.8235	84.9057	60.5948	67	18	90	16	0	0.0000
gduggal-snapplat	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	23.8140	14.0000	79.6460	57.8358	91	559	90	23	17	73.9130
gduggal-snapplat	INDEL	I1_5	map_l125_m0_e0	homalt	85.1946	78.0702	93.7500	92.5869	89	25	90	6	0	0.0000
gduggal-snapvard	SNP	*	lowcmp_SimpleRepeat_quadTR_51to200	het	34.3511	83.3333	21.6346	92.3048	85	17	90	326	5	1.5337
gduggal-snapvard	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	34.3511	75.0000	22.2772	90.2651	93	31	90	314	7	2.2293
rpoplin-dv42	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_51to200	hetalt	95.7447	92.7835	98.9011	20.8696	90	7	90	1	1	100.0000
rpoplin-dv42	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_51to200	*	59.4059	43.6893	92.7835	59.2437	90	116	90	7	7	100.0000
ckim-isaac	INDEL	D1_5	map_l250_m2_e0	*	65.2174	48.9130	97.8261	96.9405	90	94	90	2	2	100.0000
ckim-isaac	INDEL	D1_5	map_l250_m2_e1	*	64.9819	48.6486	97.8261	97.0101	90	95	90	2	2	100.0000
dgrover-gatk	INDEL	D6_15	segdup	het	97.2973	97.8261	96.7742	95.2308	90	2	90	3	0	0.0000
anovak-vg	INDEL	I16_PLUS	HG002complexvar	het	24.3337	14.7368	69.7674	51.5038	98	567	90	39	9	23.0769
astatham-gatk	INDEL	D6_15	segdup	het	96.7742	97.8261	95.7447	95.1621	90	2	90	4	0	0.0000
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	het	82.3970	81.4815	83.3333	78.7402	110	25	90	18	17	94.4444
ciseli-custom	INDEL	D6_15	map_l100_m2_e1	het	63.0961	63.7037	62.5000	90.4573	86	49	90	54	13	24.0741
cchapple-custom	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4475	100.0000	98.9011	66.2963	92	0	90	1	1	100.0000
cchapple-custom	INDEL	C6_15	*	homalt	0.0000	0.0000	96.7742	93.6039	0	0	90	3	1	33.3333
cchapple-custom	INDEL	C6_15	HG002complexvar	homalt	0.0000	0.0000	96.7742	83.0601	0	0	90	3	1	33.3333
ckim-gatk	INDEL	D6_15	segdup	het	95.2381	97.8261	92.7835	96.4154	90	2	90	7	0	0.0000
ckim-dragen	INDEL	D6_15	segdup	het	96.7742	97.8261	95.7447	96.0338	90	2	90	4	0	0.0000
ckim-dragen	INDEL	I6_15	map_siren	homalt	97.8261	100.0000	95.7447	85.1501	90	0	90	4	3	75.0000
ckim-dragen	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	100.0000	100.0000	100.0000	75.6164	89	0	89	0	0
ckim-dragen	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	97.0874	94.3396	100.0000	86.5762	100	6	89	0	0
ciseli-custom	INDEL	D6_15	map_l100_m2_e0	het	63.7616	64.8855	62.6761	90.4313	85	46	89	53	13	24.5283
ciseli-custom	INDEL	I6_15	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	17.7637	11.1244	44.0594	77.0193	93	743	89	113	102	90.2655
ckim-gatk	INDEL	D16_PLUS	map_l100_m2_e1	*	89.8990	91.7526	88.1188	95.6893	89	8	89	12	4	33.3333
ckim-gatk	INDEL	I6_15	map_siren	homalt	98.3425	98.8889	97.8022	85.3462	89	1	89	2	1	50.0000
ciseli-custom	INDEL	C1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	0.0000	0.0000	21.3429	95.1903	0	0	89	328	84	25.6098
gduggal-snapvard	INDEL	I6_15	map_l125_m2_e1	*	60.1890	64.1509	56.6879	82.9162	34	19	89	68	53	77.9412
ghariani-varprowl	INDEL	D6_15	map_l125_m1_e0	*	78.4141	76.0684	80.9091	92.1090	89	28	89	21	19	90.4762
gduggal-snapfb	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_51to200	hetalt	47.3186	31.7661	92.7083	19.3277	277	595	89	7	6	85.7143
ndellapenna-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_gt10	*	76.3948	71.7742	81.6514	99.9459	89	35	89	20	12	60.0000
mlin-fermikit	INDEL	*	segdup	hetalt	80.1843	66.9231	100.0000	93.8999	87	43	89	0	0
jlack-gatk	INDEL	I6_15	map_siren	homalt	96.7391	98.8889	94.6809	84.1484	89	1	89	5	3	60.0000
hfeng-pmm1	INDEL	I6_15	map_siren	homalt	98.3425	98.8889	97.8022	83.6331	89	1	89	2	2	100.0000
hfeng-pmm1	INDEL	D16_PLUS	map_l100_m2_e1	*	89.8990	91.7526	88.1188	92.8011	89	8	89	12	2	16.6667
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	100.0000	100.0000	100.0000	74.4986	89	0	89	0	0
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	100.0000	100.0000	100.0000	73.3533	89	0	89	0	0
jlack-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	100.0000	100.0000	100.0000	75.2089	89	0	89	0	0
hfeng-pmm2	INDEL	D16_PLUS	map_l100_m2_e1	*	88.5572	91.7526	85.5769	93.7799	89	8	89	15	3	20.0000
hfeng-pmm2	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	100.0000	100.0000	100.0000	75.0700	89	0	89	0	0
hfeng-pmm2	INDEL	I6_15	map_siren	homalt	97.8022	98.8889	96.7391	84.1105	89	1	89	3	3	100.0000
gduggal-bwavard	INDEL	D16_PLUS	map_siren	*	59.2100	61.5385	57.0513	92.6450	88	55	89	67	35	52.2388
gduggal-bwavard	INDEL	D6_15	map_l125_m1_e0	*	78.1730	76.9231	79.4643	92.1071	90	27	89	23	16	69.5652
eyeh-varpipe	INDEL	D1_5	map_l250_m2_e1	homalt	97.5297	98.3333	96.7391	95.1933	59	1	89	3	3	100.0000
eyeh-varpipe	INDEL	D6_15	map_l150_m2_e1	*	88.0187	87.0588	89.0000	89.9598	74	11	89	11	11	100.0000
ltrigg-rtg1	INDEL	C6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	0.0000	0.0000	97.8022	96.1813	0	0	89	2	1	50.0000

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