PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32051-32100 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 55.8140 | 72.1805 | 45.4976 | 78.8365 | 96 | 37 | 96 | 115 | 111 | 96.5217 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 42.8116 | 28.1132 | 89.7196 | 42.4731 | 149 | 381 | 96 | 11 | 10 | 90.9091 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 65.4311 | 59.8361 | 72.1805 | 46.5863 | 73 | 49 | 96 | 37 | 37 | 100.0000 | |
| gduggal-snapvard | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 25.1969 | 72.4113 | 0 | 0 | 96 | 285 | 78 | 27.3684 | |
| gduggal-snapvard | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 25.8760 | 72.2513 | 0 | 0 | 96 | 275 | 70 | 25.4545 | |
| rpoplin-dv42 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.5224 | 95.0495 | 96.0000 | 93.4037 | 96 | 5 | 96 | 4 | 3 | 75.0000 | |
| asubramanian-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 83.8428 | 86.4865 | 81.3559 | 96.8108 | 96 | 15 | 96 | 22 | 2 | 9.0909 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.0495 | 94.1176 | 96.0000 | 92.5540 | 96 | 6 | 96 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | INDEL | * | map_l100_m2_e0 | hetalt | 47.6427 | 32.0000 | 93.2039 | 92.5254 | 40 | 85 | 96 | 7 | 5 | 71.4286 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 71.6705 | 61.2500 | 86.3636 | 81.0017 | 98 | 62 | 95 | 15 | 4 | 26.6667 | |
| egarrison-hhga | INDEL | * | segdup | hetalt | 85.5777 | 75.3846 | 98.9583 | 95.4264 | 98 | 32 | 95 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 94.0594 | 93.1373 | 95.0000 | 59.1837 | 95 | 7 | 95 | 5 | 5 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 93.7007 | 89.8148 | 97.9381 | 75.3181 | 97 | 11 | 95 | 2 | 1 | 50.0000 | |
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.5274 | 93.1373 | 95.9596 | 92.6230 | 95 | 7 | 95 | 4 | 3 | 75.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 22.9356 | 12.9887 | 97.9381 | 34.8993 | 103 | 690 | 95 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | func_cds | homalt | 83.8633 | 78.1513 | 90.4762 | 30.4636 | 93 | 26 | 95 | 10 | 1 | 10.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l250_m1_e0 | het | 79.7395 | 96.6667 | 67.8571 | 96.3721 | 58 | 2 | 95 | 45 | 12 | 26.6667 | |
| gduggal-snapvard | INDEL | I6_15 | segdup | het | 71.6829 | 85.5422 | 61.6883 | 91.3966 | 71 | 12 | 95 | 59 | 50 | 84.7458 | |
| gduggal-snapfb | INDEL | D6_15 | segdup | het | 82.4566 | 71.7391 | 96.9388 | 89.5075 | 66 | 26 | 95 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 38.1346 | 97.7011 | 23.6908 | 69.1538 | 85 | 2 | 95 | 306 | 2 | 0.6536 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 93.2492 | 92.4528 | 94.0594 | 60.0791 | 49 | 4 | 95 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 70.0082 | 55.7522 | 94.0594 | 98.0524 | 63 | 50 | 95 | 6 | 4 | 66.6667 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 70.8955 | 66.9014 | 75.3968 | 42.7273 | 95 | 47 | 95 | 31 | 29 | 93.5484 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.9729 | 76.6129 | 97.9381 | 89.9168 | 95 | 29 | 95 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 84.9320 | 77.4194 | 94.0594 | 99.9207 | 96 | 28 | 95 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 61.3398 | 44.4444 | 98.9583 | 52.7094 | 96 | 120 | 95 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 91.4102 | 87.2727 | 95.9596 | 87.5628 | 96 | 14 | 95 | 4 | 3 | 75.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | * | 77.2358 | 66.4336 | 92.2330 | 84.8529 | 95 | 48 | 95 | 8 | 7 | 87.5000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m0_e0 | * | 91.9974 | 88.3495 | 95.9596 | 87.8378 | 91 | 12 | 95 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 54.8356 | 78.1955 | 42.2222 | 77.3642 | 104 | 29 | 95 | 130 | 109 | 83.8462 | |
| eyeh-varpipe | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 64.6259 | 92.9598 | 0 | 0 | 95 | 52 | 33 | 63.4615 | |
| eyeh-varpipe | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 70.3704 | 81.7321 | 0 | 0 | 95 | 40 | 31 | 77.5000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m0_e0 | het | 93.5961 | 89.6226 | 97.9381 | 82.0037 | 95 | 11 | 95 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 84.2593 | 72.8000 | 100.0000 | 24.6032 | 91 | 34 | 95 | 0 | 0 | ||
| cchapple-custom | INDEL | I1_5 | map_l250_m1_e0 | * | 93.2492 | 92.4528 | 94.0594 | 95.6068 | 98 | 8 | 95 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 77.8689 | 96.2531 | 0 | 0 | 95 | 27 | 1 | 3.7037 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.0297 | 94.1176 | 95.9596 | 92.6174 | 96 | 6 | 95 | 4 | 3 | 75.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m0_e0 | * | 93.0936 | 91.2621 | 95.0000 | 91.5896 | 94 | 9 | 95 | 5 | 1 | 20.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 87.9630 | 83.3333 | 93.1373 | 97.3953 | 95 | 19 | 95 | 7 | 0 | 0.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m1_e0 | het | 72.2766 | 81.9820 | 64.6259 | 95.9781 | 91 | 20 | 95 | 52 | 22 | 42.3077 | |
| anovak-vg | INDEL | D6_15 | map_l125_m2_e0 | * | 76.3127 | 73.8095 | 78.9916 | 88.9713 | 93 | 33 | 94 | 25 | 15 | 60.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_siren | hetalt | 96.8750 | 93.9394 | 100.0000 | 76.3819 | 93 | 6 | 94 | 0 | 0 | ||
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e0 | * | 87.8505 | 83.1858 | 93.0693 | 97.3379 | 94 | 19 | 94 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 92.9792 | 91.0891 | 94.9495 | 93.3557 | 92 | 9 | 94 | 5 | 3 | 60.0000 | |
| asubramanian-gatk | INDEL | * | map_l250_m1_e0 | homalt | 92.1569 | 86.2385 | 98.9474 | 95.6262 | 94 | 15 | 94 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_siren | hetalt | 96.9072 | 94.9495 | 98.9474 | 74.3243 | 94 | 5 | 94 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | map_l250_m0_e0 | het | 28.2282 | 16.4336 | 100.0000 | 99.2644 | 94 | 478 | 94 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.0580 | 85.1852 | 81.0345 | 77.6062 | 115 | 20 | 94 | 22 | 21 | 95.4545 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 83.4086 | 85.9259 | 81.0345 | 77.5629 | 116 | 19 | 94 | 22 | 21 | 95.4545 | |
| astatham-gatk | INDEL | D6_15 | map_siren | hetalt | 97.4093 | 94.9495 | 100.0000 | 75.7106 | 94 | 5 | 94 | 0 | 0 | ||