PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
3151-3200 / 86044 show all
gduggal-snapfbSNPtvmap_l100_m2_e1*
97.5848
98.0422
97.1318
71.7053
2478849524789732232
31.6940
ghariani-varprowlSNPtvmap_l100_m2_e0*
97.8210
98.9893
96.6799
73.9056
2478025324781851137
16.0987
hfeng-pmm3SNP*HG002compoundhet*
97.8284
95.8679
99.8709
39.6499
247551067247553215
46.8750
cchapple-customSNPtvmap_l100_m2_e1*
97.2075
97.9156
96.5096
71.7543
2475652724747895134
14.9721
hfeng-pmm1SNP*HG002compoundhet*
97.8294
95.8214
99.9233
39.2517
247431079247421915
78.9474
ndellapenna-hhgaSNPtvmap_l100_m2_e0*
99.2917
98.8335
99.7541
64.3936
24741292247416124
39.3443
ltrigg-rtg1SNPtvmap_l100_m2_e0*
99.2918
98.8495
99.7380
59.7315
2474528824740659
13.8462
anovak-vgINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
51.7221
46.8234
57.7656
39.6200
1774720155247261807814175
78.4102
raldana-dualsentieonSNP*HG002compoundhet*
97.7792
95.7401
99.9071
39.6169
247221100247222315
65.2174
hfeng-pmm2SNP*HG002compoundhet*
97.7436
95.7052
99.8707
39.1925
247131109247133214
43.7500
jpowers-varprowlSNPtvmap_l100_m2_e1*
97.6564
97.6506
97.6622
73.7732
2468959424689591141
23.8579
ltrigg-rtg2SNPtvmap_l100_m2_e0*
99.1825
98.6258
99.7454
56.6822
2468934424684635
7.9365
ltrigg-rtg2INDEL**hetalt
97.1063
94.8330
99.4912
68.4092
23933130424639126124
98.4127
ghariani-varprowlINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
97.1108
97.1608
97.0609
55.5769
2463972024636746544
72.9223
qzeng-customSNPtvmap_sirenhet
91.9469
86.2561
98.4416
72.2639
24677393224636390264
67.6923
gduggal-bwavardINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
97.7242
97.5630
97.8859
54.6627
2474161824632532424
79.6992
gduggal-bwavardSNPtvmap_l100_m2_e1*
95.9192
97.7930
94.1158
76.6728
24725558246321540101
6.5584
gduggal-snapvardINDEL*HG002compoundhet*
47.5012
42.0784
54.5285
56.5286
1260517351246302053916069
78.2365
astatham-gatkSNPtimap_l125_m1_e0*
91.1797
83.9407
99.7852
74.5658
246244711246205329
54.7170
ciseli-customSNP*map_l100_m2_e0homalt
90.4763
89.7867
91.1766
62.8157
2471228112460423811867
78.4124
gduggal-snapfbSNPtvmap_l100_m2_e0*
97.5647
98.0226
97.1111
71.6649
2453849524539730232
31.7808
cchapple-customSNPtvmap_l100_m2_e0*
97.1975
97.9028
96.5023
71.7198
2450852524500888133
14.9775
gduggal-bwaplatINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
88.2228
79.6951
98.7942
76.5609
24515624624497299252
84.2809
gduggal-bwaplatINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
92.7883
86.7091
99.7841
61.8573
245043756244935343
81.1321
jpowers-varprowlINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
97.1231
96.5890
97.6631
54.5313
2449486524490586552
94.1980
ckim-vqsrSNP*map_l125_m1_e0*
69.8181
53.9590
98.8800
88.0425
2445820869244552775
1.8051
qzeng-customSNPtimap_l100_m2_e1het
87.6458
79.3605
97.8627
80.9215
24570639024451534415
77.7154
jpowers-varprowlSNPtvmap_l100_m2_e0*
97.6510
97.6471
97.6549
73.7409
2444458924444587140
23.8501
gduggal-snapvardSNPtvmap_l100_m2_e1*
94.5392
97.0059
92.1948
76.2078
24526757244272068154
7.4468
gduggal-bwavardSNPtvmap_l100_m2_e0*
95.9136
97.8069
94.0922
76.6349
2448454924400153299
6.4621
bgallagher-sentieonSNPtvmap_l100_m1_e0*
99.3526
99.5959
99.1104
66.8404
24402992439821931
14.1553
ciseli-customSNPtimap_l100_m2_e1het
83.3126
78.8921
88.2578
75.0429
24425653524398324686
2.6494
hfeng-pmm3SNPtvmap_l100_m1_e0*
99.6386
99.5919
99.6854
64.5700
24401100243977710
12.9870
hfeng-pmm2SNPtvmap_l100_m1_e0*
99.4801
99.5919
99.3687
67.2876
244011002439715517
10.9677
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
56.8514
55.5879
58.1738
61.2449
2408919246243941753913551
77.2621
dgrover-gatkSNPtvmap_l100_m1_e0*
99.4329
99.4817
99.3842
68.2243
243741272437015129
19.2053
raldana-dualsentieonSNPtvmap_l100_m1_e0*
99.3984
99.4735
99.3234
65.0677
24372129243681665
3.0121
hfeng-pmm1SNPtvmap_l100_m1_e0*
99.6055
99.4531
99.7584
64.1006
24367134243635917
28.8136
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
72.5469
76.4799
68.9986
69.9494
23308716824351109414932
45.0781
ciseli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
72.5469
76.4799
68.9986
69.9494
23308716824351109414932
45.0781
ckim-dragenSNPtvmap_l100_m1_e0*
98.6576
99.2817
98.0414
69.3325
243251762432848645
9.2593
jli-customSNPtvmap_l100_m1_e0*
99.4197
99.2980
99.5417
62.1631
243291722432811230
26.7857
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
79.1914
73.9716
85.2037
51.7929
1318146382431842231294
30.6417
rpoplin-dv42SNPtvmap_l100_m1_e0*
99.2751
99.2204
99.3298
64.0760
243101912430616480
48.7805
gduggal-snapplatINDELI1_5HG002complexvar*
77.0714
71.7352
83.2654
65.6966
239339430243014884375
7.6781
egarrison-hhgaSNPtvmap_l100_m1_e0*
99.4963
99.1715
99.8233
63.2033
24298203242984319
44.1860
gduggal-bwafbSNPtvmap_l100_m1_e0*
98.8766
99.1511
98.6037
68.5198
242932082429334455
15.9884
jlack-gatkSNPtvmap_l100_m1_e0*
96.1408
99.1511
93.3080
76.0138
24293208242891742100
5.7405
eyeh-varpipeSNPtvmap_l100_m1_e0*
97.3811
99.7714
95.1026
69.0013
244455624274125021
1.6800
gduggal-bwaplatSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
92.4984
86.7234
99.0973
67.6373
2424737122426222175
33.9367