PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
3101-3150 / 86044 show all
bgallagher-sentieonSNPtvmap_l100_m2_e1*
99.3647
99.6084
99.1222
68.5080
25184992518022331
13.9013
hfeng-pmm3SNPtvmap_l100_m2_e1*
99.6458
99.6045
99.6872
66.3290
25183100251797910
12.6582
hfeng-pmm2SNPtvmap_l100_m2_e1*
99.4903
99.6045
99.3764
68.9155
251831002517915817
10.7595
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
81.0523
77.6490
84.7677
58.0295
2438870202517645244294
94.9160
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
81.0523
77.6490
84.7677
58.0295
2438870202517645244294
94.9160
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.7194
99.5347
99.9047
51.7499
25241118251642415
62.5000
ltrigg-rtg1SNP*HG002compoundhet*
98.7318
97.7074
99.7779
38.3623
25230592251605617
30.3571
jlack-gatkINDELD6_15**
96.4774
96.4127
96.5422
54.8116
2515693625156901581
64.4839
asubramanian-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.5409
99.1719
99.9126
55.4663
25149210251562213
59.0909
dgrover-gatkSNPtvmap_l100_m2_e1*
99.4445
99.4977
99.3914
69.7839
251561272515215429
18.8312
raldana-dualsentieonSNPtvmap_l100_m2_e1*
99.4052
99.4898
99.3207
66.9624
25154129251501725
2.9070
qzeng-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.4978
99.2429
99.7541
54.5635
25167192251486234
54.8387
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.4090
99.1601
99.6591
54.8028
25146213251448660
69.7674
hfeng-pmm1SNPtvmap_l100_m2_e1*
99.6118
99.4660
99.7580
65.8552
25148135251446117
27.8689
ltrigg-rtg1INDELD6_15**
98.2810
97.0642
99.5288
47.5098
253267662513311976
63.8655
ltrigg-rtg1INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.6222
99.3336
99.9125
51.6616
25190169251132214
63.6364
jli-customSNPtvmap_l100_m2_e1*
99.4258
99.3157
99.5362
64.2630
251101732510911730
25.6410
ckim-dragenSNPtvmap_l100_m2_e1*
98.6522
99.2920
98.0206
71.3656
251041792510750745
8.8757
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_diTR_11to50het
95.7841
93.1472
98.5746
46.7673
14680108025103363284
78.2369
rpoplin-dv42SNPtvmap_l100_m2_e1*
99.2936
99.2446
99.3427
66.1225
250921912508816680
48.1928
egarrison-hhgaSNPtvmap_l100_m2_e1*
99.4981
99.1892
99.8090
65.1604
25078205250784819
39.5833
gduggal-bwafbSNPtvmap_l100_m2_e1*
98.8936
99.1694
98.6194
70.5239
250732102507335156
15.9544
jlack-gatkSNPtvmap_l100_m2_e1*
96.2124
99.1773
93.4195
77.4540
25075208250711766100
5.6625
gduggal-bwafbINDELD6_15**
94.1659
91.7408
96.7228
49.8237
23937215525057849794
93.5218
eyeh-varpipeSNPtvmap_l100_m2_e1*
97.4090
99.7785
95.1495
70.7126
252275625050127721
1.6445
gduggal-snapvardINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
98.0746
98.4739
97.6786
54.4653
2497238725036595449
75.4622
ghariani-varprowlSNPtvmap_l100_m2_e1*
97.8230
98.9914
96.6819
73.9531
2502825525029859138
16.0652
ltrigg-rtg1SNPtvmap_l100_m2_e1*
99.2889
98.8609
99.7207
59.7908
2499528824990709
12.8571
ndellapenna-hhgaSNPtvmap_l100_m2_e1*
99.2907
98.8332
99.7525
64.4232
24988295249886224
38.7097
asubramanian-gatkSNP*HG002compoundhet*
97.7516
96.6501
98.8785
41.8929
249578652495028328
9.8940
ltrigg-rtg2SNPtvmap_l100_m2_e1*
99.1807
98.6394
99.7280
56.7507
2493934424934685
7.3529
bgallagher-sentieonSNPtvmap_l100_m2_e0*
99.3603
99.6045
99.1174
68.4796
24934992493022231
13.9640
hfeng-pmm3SNPtvmap_l100_m2_e0*
99.6443
99.6005
99.6881
66.3015
24933100249297810
12.8205
hfeng-pmm2SNPtvmap_l100_m2_e0*
99.4872
99.6005
99.3742
68.8945
249331002492915717
10.8280
mlin-fermikitINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
98.6770
98.2373
99.1206
53.5009
2491244724909221216
97.7376
dgrover-gatkSNPtvmap_l100_m2_e0*
99.4410
99.4927
99.3893
69.7626
249061272490215329
18.9542
gduggal-snapfbINDEL*HG002complexvarhomalt
93.4910
91.9932
95.0384
54.0929
248632164249011300829
63.7692
raldana-dualsentieonSNPtvmap_l100_m2_e0*
99.4052
99.4847
99.3259
66.9200
24904129249001695
2.9586
hfeng-pmm1SNPtvmap_l100_m2_e0*
99.6119
99.4647
99.7596
65.8235
24899134248956017
28.3333
ckim-isaacINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
98.9120
98.2491
99.5839
53.4969
249154442489010467
64.4231
jli-customSNPtvmap_l100_m2_e0*
99.4221
99.3089
99.5355
64.2177
248601732485911630
25.8621
ckim-dragenSNPtvmap_l100_m2_e0*
98.6448
99.2929
98.0051
71.3118
248561772485950645
8.8933
gduggal-snapplatSNP*map_l100_m1_e0homalt
95.8529
92.1009
99.9236
61.4019
248702133248541914
73.6842
ciseli-customSNP*map_l100_m2_e1homalt
90.5022
89.8151
91.2000
62.7951
2496528312485223981881
78.4404
rpoplin-dv42SNPtvmap_l100_m2_e0*
99.2885
99.2370
99.3401
66.0825
248421912483816580
48.4848
egarrison-hhgaSNPtvmap_l100_m2_e0*
99.4951
99.1851
99.8071
65.1309
24829204248294819
39.5833
gduggal-bwafbSNPtvmap_l100_m2_e0*
98.8866
99.1651
98.6097
70.4745
248242092482435055
15.7143
jlack-gatkSNPtvmap_l100_m2_e0*
96.1775
99.1691
93.3612
77.4337
24825208248211765100
5.6657
eyeh-varpipeSNPtvmap_l100_m2_e0*
97.4043
99.7763
95.1424
70.6557
249775624816126721
1.6575
cchapple-customINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
98.3105
97.4328
99.2041
31.5728
2391063024805199188
94.4724