PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31351-31400 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | * | map_l250_m2_e0 | homalt | 97.8166 | 97.3913 | 98.2456 | 95.1136 | 112 | 3 | 112 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 94.9153 | 100.0000 | 90.3226 | 63.9535 | 92 | 0 | 112 | 12 | 5 | 41.6667 | |
| raldana-dualsentieon | INDEL | * | map_l100_m2_e0 | hetalt | 93.6170 | 88.0000 | 100.0000 | 84.7826 | 110 | 15 | 112 | 0 | 0 | ||
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.1642 | 98.7805 | 91.8033 | 88.0392 | 162 | 2 | 112 | 10 | 8 | 80.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5702 | 98.7805 | 92.5620 | 88.0435 | 162 | 2 | 112 | 9 | 7 | 77.7778 | |
| anovak-vg | INDEL | I1_5 | map_l150_m0_e0 | * | 58.6797 | 59.6591 | 57.7320 | 93.8118 | 105 | 71 | 112 | 82 | 51 | 62.1951 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 92.4647 | 88.7097 | 96.5517 | 99.9368 | 110 | 14 | 112 | 4 | 0 | 0.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 62.0854 | 55.5024 | 70.4403 | 70.2247 | 116 | 93 | 112 | 47 | 28 | 59.5745 | |
| anovak-vg | INDEL | D6_15 | map_l100_m1_e0 | het | 76.0494 | 78.5714 | 73.6842 | 85.5238 | 99 | 27 | 112 | 40 | 23 | 57.5000 | |
| cchapple-custom | INDEL | * | map_l250_m2_e0 | homalt | 97.8166 | 97.3913 | 98.2456 | 94.7441 | 112 | 3 | 112 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | * | map_l100_m1_e0 | hetalt | 94.4681 | 89.5161 | 100.0000 | 85.7143 | 111 | 13 | 112 | 0 | 0 | ||
| ckim-dragen | INDEL | * | map_l250_m2_e1 | homalt | 96.5517 | 96.5517 | 96.5517 | 95.0491 | 112 | 4 | 112 | 4 | 4 | 100.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.1012 | 99.3902 | 94.9153 | 88.6973 | 163 | 1 | 112 | 6 | 5 | 83.3333 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | * | 96.1373 | 95.7265 | 96.5517 | 91.3883 | 112 | 5 | 112 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m0_e0 | homalt | 97.8204 | 99.1228 | 96.5517 | 84.2818 | 113 | 1 | 112 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e0 | * | 96.9697 | 96.5517 | 97.3913 | 88.8023 | 112 | 4 | 112 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I6_15 | map_l100_m2_e1 | * | 96.9697 | 96.5517 | 97.3913 | 89.0580 | 112 | 4 | 112 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.4462 | 99.3902 | 91.8033 | 88.0275 | 163 | 1 | 112 | 10 | 8 | 80.0000 | |
| cchapple-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.3162 | 86.2903 | 92.5620 | 89.7544 | 107 | 17 | 112 | 9 | 0 | 0.0000 | |
| egarrison-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.2878 | 89.5161 | 97.3913 | 86.9615 | 111 | 13 | 112 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 78.3217 | 96.5283 | 0 | 1 | 112 | 31 | 4 | 12.9032 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 78.3217 | 96.5283 | 0 | 1 | 112 | 31 | 4 | 12.9032 | |
| dgrover-gatk | INDEL | D6_15 | map_l125_m1_e0 | * | 96.9697 | 95.7265 | 98.2456 | 91.4286 | 112 | 5 | 112 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 76.0576 | 66.0714 | 89.6000 | 69.0594 | 111 | 57 | 112 | 13 | 4 | 30.7692 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | homalt | 70.4403 | 54.9020 | 98.2456 | 86.5882 | 112 | 92 | 112 | 2 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | * | map_l250_m2_e0 | homalt | 97.3913 | 97.3913 | 97.3913 | 95.3176 | 112 | 3 | 112 | 3 | 1 | 33.3333 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 85.8238 | 91.8033 | 80.5755 | 80.1994 | 112 | 10 | 112 | 27 | 16 | 59.2593 | |
| ckim-vqsr | INDEL | D6_15 | map_l125_m1_e0 | * | 96.1373 | 95.7265 | 96.5517 | 92.8129 | 112 | 5 | 112 | 4 | 1 | 25.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.5702 | 98.7805 | 92.5620 | 88.2296 | 162 | 2 | 112 | 9 | 7 | 77.7778 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 65.1163 | 73.2026 | 58.6387 | 74.4652 | 112 | 41 | 112 | 79 | 62 | 78.4810 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 78.8127 | 90.1639 | 70.0000 | 64.4444 | 110 | 12 | 112 | 48 | 48 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m2_e1 | hetalt | 90.9869 | 84.0909 | 99.1150 | 91.3476 | 111 | 21 | 112 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l250_m2_e1 | homalt | 97.3913 | 96.5517 | 98.2456 | 95.5277 | 112 | 4 | 112 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.2220 | 86.2903 | 86.1538 | 93.2079 | 107 | 17 | 112 | 18 | 1 | 5.5556 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e1 | homalt | 98.2456 | 96.5517 | 100.0000 | 92.8205 | 112 | 4 | 112 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e1 | het | 93.3333 | 91.8033 | 94.9153 | 96.5547 | 112 | 10 | 112 | 6 | 3 | 50.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 77.9143 | 85.8268 | 71.3376 | 72.6003 | 109 | 18 | 112 | 45 | 44 | 97.7778 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m1_e0 | * | 97.3913 | 95.7265 | 99.1150 | 87.6096 | 112 | 5 | 112 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 87.1595 | 78.3217 | 98.2456 | 92.8750 | 112 | 31 | 112 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e0 | homalt | 97.3913 | 97.3913 | 97.3913 | 95.1963 | 112 | 3 | 112 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | * | map_l100_m2_e0 | hetalt | 92.8870 | 88.8000 | 97.3684 | 89.1841 | 111 | 14 | 111 | 3 | 0 | 0.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 99.0990 | 99.0909 | 99.1071 | 90.7970 | 109 | 1 | 111 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l125_m0_e0 | homalt | 97.7974 | 97.3684 | 98.2301 | 84.0395 | 111 | 3 | 111 | 2 | 1 | 50.0000 | |
| ckim-dragen | INDEL | * | map_l250_m2_e0 | homalt | 96.5217 | 96.5217 | 96.5217 | 94.9782 | 111 | 4 | 111 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.0906 | 99.0741 | 99.1071 | 88.6525 | 107 | 1 | 111 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | map_l100_m2_e0 | * | 96.5217 | 95.6897 | 97.3684 | 90.3635 | 111 | 5 | 111 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | I6_15 | map_l100_m2_e1 | * | 96.5217 | 95.6897 | 97.3684 | 90.5863 | 111 | 5 | 111 | 3 | 1 | 33.3333 | |
| ckim-gatk | INDEL | * | map_l100_m2_e0 | hetalt | 93.1624 | 87.2000 | 100.0000 | 87.7076 | 109 | 16 | 111 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l250_m1_e0 | het | 88.8000 | 100.0000 | 79.8561 | 97.0394 | 111 | 0 | 111 | 28 | 1 | 3.5714 | |
| ciseli-custom | INDEL | D16_PLUS | HG002compoundhet | het | 17.8807 | 11.8519 | 36.3934 | 44.8463 | 48 | 357 | 111 | 194 | 186 | 95.8763 | |