PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31201-31250 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D1_5 | map_l250_m2_e1 | * | 66.7396 | 61.6216 | 72.7848 | 97.3275 | 114 | 71 | 115 | 43 | 14 | 32.5581 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 35.3846 | 71.4286 | 23.5174 | 34.4504 | 115 | 46 | 115 | 374 | 359 | 95.9893 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e0 | het | 95.8333 | 95.0413 | 96.6387 | 95.1009 | 115 | 6 | 115 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 86.1423 | 94.2623 | 79.3103 | 80.9461 | 115 | 7 | 115 | 30 | 20 | 66.6667 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l250_m2_e0 | het | 96.5812 | 93.3884 | 100.0000 | 90.2625 | 113 | 8 | 115 | 0 | 0 | ||
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 52.5915 | 75.0000 | 40.4930 | 99.8509 | 93 | 31 | 115 | 169 | 4 | 2.3669 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.0387 | 90.3226 | 82.1429 | 92.1875 | 112 | 12 | 115 | 25 | 5 | 20.0000 | |
| mlin-fermikit | SNP | tv | map_l250_m0_e0 | het | 33.2370 | 20.1049 | 95.8333 | 85.2399 | 115 | 457 | 115 | 5 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I6_15 | segdup | * | 72.0984 | 66.8571 | 78.2313 | 93.2039 | 117 | 58 | 115 | 32 | 32 | 100.0000 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e0 | hetalt | 94.9580 | 90.4000 | 100.0000 | 87.9958 | 113 | 12 | 115 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 32.5779 | 41.6667 | 26.7442 | 96.8657 | 115 | 161 | 115 | 315 | 15 | 4.7619 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e0 | het | 77.5447 | 88.7324 | 68.8623 | 85.9428 | 63 | 8 | 115 | 52 | 35 | 67.3077 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m2_e1 | het | 77.2841 | 88.7324 | 68.4524 | 86.1272 | 63 | 8 | 115 | 53 | 35 | 66.0377 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 36.3924 | 88.4798 | 0 | 0 | 115 | 201 | 40 | 19.9005 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 66.2942 | 51.5837 | 92.7419 | 97.1812 | 114 | 107 | 115 | 9 | 4 | 44.4444 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 61.8280 | 95.2210 | 0 | 0 | 115 | 71 | 46 | 64.7887 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 61.8280 | 95.2210 | 0 | 0 | 115 | 71 | 46 | 64.7887 | |
| gduggal-bwafb | INDEL | D6_15 | segdup | het | 92.0280 | 85.8696 | 99.1379 | 92.8439 | 79 | 13 | 115 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.0679 | 15 | 0 | 115 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | map_l250_m2_e1 | homalt | 97.8723 | 99.1379 | 96.6387 | 95.8709 | 115 | 1 | 115 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 66.8472 | 50.8696 | 97.4576 | 61.1842 | 117 | 113 | 115 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.8776 | 90.5512 | 97.4576 | 75.5694 | 115 | 12 | 115 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 68.8645 | 52.5140 | 100.0000 | 28.5714 | 94 | 85 | 115 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 33.1255 | 25.5937 | 46.9388 | 67.3333 | 97 | 282 | 115 | 130 | 84 | 64.6154 | |
| asubramanian-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 94.5744 | 91.1290 | 98.2906 | 87.2964 | 113 | 11 | 115 | 2 | 1 | 50.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 94.2623 | 91.2698 | 97.4576 | 92.5174 | 115 | 11 | 115 | 3 | 1 | 33.3333 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l250_m2_e1 | het | 96.6387 | 94.2623 | 99.1379 | 94.0604 | 115 | 7 | 115 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 94.6502 | 90.5512 | 99.1379 | 77.1203 | 115 | 12 | 115 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | * | map_l100_m2_e1 | hetalt | 92.3109 | 86.3636 | 99.1379 | 88.0903 | 114 | 18 | 115 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l250_m2_e1 | homalt | 97.8723 | 99.1379 | 96.6387 | 95.1744 | 115 | 1 | 115 | 4 | 3 | 75.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.8776 | 90.5512 | 97.4576 | 76.1616 | 115 | 12 | 115 | 3 | 3 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m2_e1 | het | 90.1961 | 94.2623 | 86.4662 | 97.5411 | 115 | 7 | 115 | 18 | 1 | 5.5556 | |
| ckim-isaac | INDEL | I1_5 | func_cds | homalt | 98.2906 | 96.6387 | 100.0000 | 22.2973 | 115 | 4 | 115 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m0_e0 | * | 78.7671 | 65.3409 | 99.1379 | 93.2676 | 115 | 61 | 115 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I16_PLUS | HG002complexvar | homalt | 50.1099 | 36.8932 | 78.0822 | 66.5138 | 114 | 195 | 114 | 32 | 13 | 40.6250 | |
| dgrover-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 94.9615 | 91.1290 | 99.1304 | 86.7512 | 113 | 11 | 114 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l250_m2_e0 | het | 90.1186 | 94.2149 | 86.3636 | 97.4995 | 114 | 7 | 114 | 18 | 1 | 5.5556 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m0_e0 | homalt | 99.1304 | 100.0000 | 98.2759 | 86.0744 | 114 | 0 | 114 | 2 | 1 | 50.0000 | |
| ckim-vqsr | INDEL | * | map_l250_m2_e1 | homalt | 98.7013 | 98.2759 | 99.1304 | 95.7549 | 114 | 2 | 114 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 86.7946 | 114 | 0 | 114 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 69.9877 | 92.1053 | 56.4356 | 92.2038 | 140 | 12 | 114 | 88 | 4 | 4.5455 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e0 | homalt | 97.8541 | 99.1304 | 96.6102 | 95.7812 | 114 | 1 | 114 | 4 | 3 | 75.0000 | |
| mlin-fermikit | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 90.7398 | 88.1890 | 93.4426 | 69.3467 | 112 | 15 | 114 | 8 | 7 | 87.5000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 84.7059 | 114 | 0 | 114 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.0000 | 93.4426 | 96.6102 | 64.0244 | 114 | 8 | 114 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.9497 | 87.9032 | 94.2149 | 86.1556 | 109 | 15 | 114 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 86.3636 | 95.4183 | 0 | 1 | 114 | 18 | 1 | 5.5556 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 86.3636 | 95.4183 | 0 | 1 | 114 | 18 | 1 | 5.5556 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 85.4478 | 114 | 0 | 114 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | D6_15 | map_l125_m1_e0 | * | 98.2759 | 97.4359 | 99.1304 | 88.8781 | 114 | 3 | 114 | 1 | 0 | 0.0000 | |