PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
3051-3100 / 86044 show all
ckim-vqsrSNP*map_l125_m2_e0*
70.4819
54.7482
98.9056
88.7400
2558021143255772836
2.1201
ckim-gatkINDELD6_15**
98.2230
97.9802
98.4670
55.8597
2556552725564398344
86.4322
ckim-gatkSNP*HG002compoundhet*
99.3973
99.0009
99.7970
41.7198
25564258255615238
73.0769
anovak-vgINDELI1_5*het
38.2803
26.6836
67.7044
67.2836
210915795025553121894021
32.9888
ckim-vqsrINDELD6_15**
98.2389
97.9189
98.5610
55.8987
2554954325548373340
91.1528
jmaeng-gatkSNP*HG002compoundhet*
99.3502
98.8847
99.8202
41.8705
25534288255314639
84.7826
bgallagher-sentieonINDELD6_15**
98.0100
97.7771
98.2439
54.8211
2551258025511456416
91.2281
gduggal-snapvardINDELD1_5HG002complexvarhet
89.8124
96.1325
84.2721
56.4465
199608032551047613355
70.4684
ckim-dragenINDELD6_15**
97.9198
97.6928
98.1478
56.3201
2549060225488481433
90.0208
ltrigg-rtg2SNP*HG002compoundhet*
99.3639
98.9737
99.7572
37.9767
25557265254736219
30.6452
jmaeng-gatkINDELD6_15**
97.9970
97.6008
98.3964
55.6203
2546662625465415366
88.1928
astatham-gatkSNP*HG002compoundhet*
99.2284
98.6058
99.8588
41.2826
25462360254553634
94.4444
astatham-gatkSNPtimap_l125_m2_e0*
91.2512
84.0571
99.7920
76.0047
254344824254305329
54.7170
anovak-vgSNP*map_l125_m1_e0het
77.1793
90.4691
67.2939
76.7918
25686270625425123572688
21.7529
qzeng-customINDELD6_15**
90.6408
92.3501
88.9936
51.4321
2409619962541331431242
39.5164
egarrison-hhgaSNP*HG002compoundhet*
98.8848
98.3812
99.3937
39.7483
2540441825408155114
73.5484
gduggal-snapplatSNP*map_l100_m2_e0homalt
95.9129
92.2138
99.9212
63.8760
253802143253642015
75.0000
ltrigg-rtg2INDELD6_15**
98.6807
97.9036
99.4704
46.9068
255455472535413583
61.4815
asubramanian-gatkINDELD6_15**
97.6552
97.1179
98.1984
55.4499
2534075225346465420
90.3226
hfeng-pmm1INDELD6_15**
98.1898
97.0872
99.3178
50.8773
2533276025331174155
89.0805
qzeng-customINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
98.7953
98.1565
99.4425
52.2443
2609492532914236
25.3521
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8817
99.8462
99.9171
55.0271
2532039253232116
76.1905
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8718
99.8265
99.9171
55.1617
2531544253182116
76.1905
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8383
99.8028
99.8737
55.5058
2530950253073217
53.1250
ckim-vqsrSNP*HG002compoundhet*
98.9056
97.9940
99.8343
41.9777
25304518253014232
76.1905
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8087
99.7595
99.8579
55.0764
2529861253003629
80.5556
rpoplin-dv42INDELD6_15**
97.4536
96.9493
97.9633
52.8335
2529679625300526501
95.2471
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.7712
99.7476
99.7949
55.7977
2529564252985225
48.0769
ckim-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8126
99.7437
99.8815
55.8039
2529465252973017
56.6667
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8303
99.7319
99.9289
55.1102
2529168252941812
66.6667
jli-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8263
99.7319
99.9210
54.5963
2529168252932015
75.0000
hfeng-pmm2INDELD6_15**
98.0668
96.9186
99.2426
51.7103
2528880425288193170
88.0829
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.7868
99.6845
99.8894
55.8752
2527980252822815
53.5714
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8164
99.6885
99.9447
54.6733
2528079252811410
71.4286
hfeng-pmm3INDELD6_15**
98.0738
96.8879
99.2891
51.0206
2528081225279181162
89.5028
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8105
99.6688
99.9525
54.4112
252758425277127
58.3333
raldana-dualsentieonINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8006
99.6609
99.9407
54.5675
2527386252751511
73.3333
jpowers-varprowlINDEL*HG002complexvarhomalt
94.9661
93.9024
96.0543
47.7714
253791648252691038887
85.4528
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.7571
99.6017
99.9130
55.8468
25258101252612214
63.6364
hfeng-pmm1INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.7867
99.6017
99.9723
54.3769
252581012526073
42.8571
ndellapenna-hhgaSNP*HG002compoundhet*
98.3720
97.8158
98.9346
39.5539
2525856425258272233
85.6618
ghariani-varprowlINDEL*HG002complexvarhomalt
94.5817
93.8099
95.3663
48.0723
253541673252531227858
69.9267
anovak-vgSNPtimap_l125_m1_e0*
81.2273
86.8110
76.3184
74.3923
2546638692525378361746
22.2818
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.6427
99.5150
99.7707
54.4892
25236123252365845
77.5862
raldana-dualsentieonINDELD6_15**
97.6719
96.7155
98.6474
52.2270
2523585725235346333
96.2428
cchapple-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.7531
99.6254
99.8811
52.9851
2526495252093021
70.0000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.5852
99.4085
99.7626
54.0647
25209150252096050
83.3333
ciseli-customSNP*map_l100_m0_e0*
81.1632
76.8673
85.9677
74.4366
2524475972519841131141
27.7413
mlin-fermikitSNP*map_l100_m1_e0het
71.0748
55.5458
98.6565
54.0604
25195201642518734311
3.2070
gduggal-bwafbINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.5573
99.3217
99.7940
54.6839
25187172251855239
75.0000