PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30901-30950 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.9592 | 96.0000 | 100.0000 | 26.9461 | 120 | 5 | 122 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l150_m1_e0 | homalt | 69.5157 | 53.5088 | 99.1870 | 82.9167 | 122 | 106 | 122 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 78.2135 | 67.4157 | 93.1298 | 72.7651 | 120 | 58 | 122 | 9 | 3 | 33.3333 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.8254 | 96.0630 | 97.6000 | 79.5417 | 122 | 5 | 122 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_siren | het | 91.3236 | 84.6154 | 99.1870 | 88.4507 | 121 | 22 | 122 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l125_m2_e1 | * | 96.8254 | 95.3125 | 98.3871 | 91.5416 | 122 | 6 | 122 | 2 | 1 | 50.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.4427 | 100.0000 | 93.1298 | 87.4641 | 122 | 0 | 122 | 9 | 9 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 71.7593 | 122 | 0 | 122 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | D6_15 | map_l125_m2_e1 | * | 96.8254 | 95.3125 | 98.3871 | 91.4365 | 122 | 6 | 122 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.0630 | 100.0000 | 92.4242 | 87.4046 | 122 | 0 | 122 | 10 | 10 | 100.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 71.8245 | 122 | 0 | 122 | 0 | 0 | ||
| asubramanian-gatk | INDEL | * | segdup | hetalt | 95.6238 | 92.3077 | 99.1870 | 94.8211 | 120 | 10 | 122 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | map_l100_m2_e1 | hetalt | 94.8678 | 90.9091 | 99.1870 | 86.1953 | 120 | 12 | 122 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m2_e1 | het | 96.8254 | 100.0000 | 93.8462 | 95.9286 | 122 | 0 | 122 | 8 | 1 | 12.5000 | |
| astatham-gatk | INDEL | * | map_l100_m2_e1 | hetalt | 95.2381 | 90.9091 | 100.0000 | 87.2518 | 120 | 12 | 122 | 0 | 0 | ||
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m1_e0 | het | 96.8254 | 96.8254 | 96.8254 | 81.9742 | 122 | 4 | 122 | 4 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.2112 | 96.0630 | 98.3871 | 74.4856 | 122 | 5 | 122 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D6_15 | map_l125_m2_e0 | * | 97.9920 | 96.8254 | 99.1870 | 89.2576 | 122 | 4 | 122 | 1 | 0 | 0.0000 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.6000 | 98.3871 | 96.8254 | 90.5405 | 122 | 2 | 122 | 4 | 2 | 50.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e1 | * | 96.4427 | 95.3125 | 97.6000 | 93.0748 | 122 | 6 | 122 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.3125 | 100.0000 | 91.0448 | 86.9776 | 122 | 0 | 122 | 12 | 11 | 91.6667 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e1 | het | 92.0152 | 99.1803 | 85.8156 | 97.4396 | 121 | 1 | 121 | 20 | 1 | 5.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 96.8000 | 96.0317 | 97.5806 | 92.9785 | 121 | 5 | 121 | 3 | 1 | 33.3333 | |
| jmaeng-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5885 | 99.1803 | 100.0000 | 71.9258 | 121 | 1 | 121 | 0 | 0 | ||
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.4506 | 90.1515 | 99.1803 | 77.1107 | 119 | 13 | 121 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D16_PLUS | map_siren | * | 92.1763 | 86.7133 | 98.3740 | 86.2876 | 124 | 19 | 121 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 88.5017 | 79.3750 | 100.0000 | 77.5510 | 127 | 33 | 121 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l250_m2_e1 | het | 97.1888 | 99.1803 | 95.2756 | 95.1729 | 121 | 1 | 121 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5885 | 99.1803 | 100.0000 | 67.9894 | 121 | 1 | 121 | 0 | 0 | ||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.6522 | 99.1803 | 92.3664 | 87.2444 | 121 | 1 | 121 | 10 | 10 | 100.0000 | |
| ckim-gatk | INDEL | * | segdup | hetalt | 95.5823 | 91.5385 | 100.0000 | 94.4622 | 119 | 11 | 121 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l250_m2_e0 | het | 89.6296 | 100.0000 | 81.2081 | 97.1866 | 121 | 0 | 121 | 28 | 1 | 3.5714 | |
| ckim-gatk | INDEL | D6_15 | map_l125_m2_e0 | * | 96.0317 | 96.0317 | 96.0317 | 92.9688 | 121 | 5 | 121 | 5 | 1 | 20.0000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 80.6667 | 95.5264 | 0 | 0 | 121 | 29 | 2 | 6.8966 | |
| cchapple-custom | INDEL | D1_5 | map_l250_m2_e1 | het | 93.0589 | 97.5410 | 88.9706 | 95.0292 | 119 | 3 | 121 | 15 | 1 | 6.6667 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e1 | * | 95.6522 | 94.5312 | 96.8000 | 91.8936 | 121 | 7 | 121 | 4 | 1 | 25.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 94.5312 | 99.1803 | 90.2985 | 86.3821 | 121 | 1 | 121 | 13 | 11 | 84.6154 | |
| ckim-dragen | INDEL | * | segdup | hetalt | 95.5823 | 91.5385 | 100.0000 | 94.5025 | 119 | 11 | 121 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 80.1325 | 95.2756 | 69.1429 | 50.8427 | 121 | 6 | 121 | 54 | 40 | 74.0741 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_siren | * | 84.5587 | 83.9161 | 85.2113 | 88.7658 | 120 | 23 | 121 | 21 | 9 | 42.8571 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 15.2393 | 84.6154 | 8.3737 | 81.4696 | 121 | 22 | 121 | 1324 | 15 | 1.1329 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 70.0566 | 57.5000 | 89.6296 | 82.8897 | 115 | 85 | 121 | 14 | 5 | 35.7143 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e1 | het | 79.7221 | 68.1481 | 96.0317 | 76.1815 | 92 | 43 | 121 | 5 | 4 | 80.0000 | |
| hfeng-pmm1 | INDEL | * | map_l100_m2_e1 | hetalt | 94.8207 | 90.1515 | 100.0000 | 87.7654 | 119 | 13 | 121 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e0 | * | 94.7418 | 92.0635 | 97.5806 | 88.6343 | 116 | 10 | 121 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 24.8881 | 14.3987 | 91.6667 | 67.0000 | 91 | 541 | 121 | 11 | 11 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 79.0807 | 98.3607 | 66.1202 | 63.2530 | 120 | 2 | 121 | 62 | 56 | 90.3226 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 65.2610 | 83.5526 | 53.5398 | 93.1390 | 127 | 25 | 121 | 105 | 14 | 13.3333 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m1_e0 | het | 96.4143 | 96.0317 | 96.8000 | 86.3983 | 121 | 5 | 121 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.6522 | 99.1803 | 92.3664 | 84.9771 | 121 | 1 | 121 | 10 | 10 | 100.0000 | |