PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30651-30700 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 89.5833 | 95.5556 | 84.3137 | 91.6485 | 129 | 6 | 129 | 24 | 3 | 12.5000 | |
| jlack-gatk | INDEL | D6_15 | map_siren | homalt | 98.0843 | 98.4615 | 97.7099 | 81.5752 | 128 | 2 | 128 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9697 | 97.7099 | 96.2406 | 89.0445 | 128 | 3 | 128 | 5 | 1 | 20.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_siren | homalt | 98.0843 | 98.4615 | 97.7099 | 87.2070 | 128 | 2 | 128 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.1142 | 74.5902 | 88.8889 | 51.3514 | 91 | 31 | 128 | 16 | 16 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l250_m1_e0 | het | 96.8418 | 98.1982 | 95.5224 | 94.5946 | 109 | 2 | 128 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 32.5233 | 24.3750 | 48.8550 | 47.4950 | 39 | 121 | 128 | 134 | 134 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e0 | homalt | 69.1892 | 52.8926 | 100.0000 | 93.1660 | 128 | 114 | 128 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 43.6411 | 76.8293 | 30.4762 | 68.5864 | 126 | 38 | 128 | 292 | 286 | 97.9452 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 78.0258 | 97.6378 | 64.9746 | 77.1991 | 124 | 3 | 128 | 69 | 47 | 68.1159 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.6744 | 95.4545 | 100.0000 | 78.8079 | 126 | 6 | 128 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e0 | het | 77.5758 | 97.7099 | 64.3216 | 90.1143 | 128 | 3 | 128 | 71 | 65 | 91.5493 | |
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 76.3488 | 85.1613 | 69.1892 | 86.1111 | 132 | 23 | 128 | 57 | 38 | 66.6667 | |
| gduggal-snapvard | INDEL | D6_15 | map_l125_m1_e0 | * | 71.3819 | 70.0855 | 72.7273 | 85.2349 | 82 | 35 | 128 | 48 | 32 | 66.6667 | |
| gduggal-snapvard | INDEL | I6_15 | map_l100_m1_e0 | het | 70.0428 | 89.8305 | 57.3991 | 79.1978 | 53 | 6 | 128 | 95 | 77 | 81.0526 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9697 | 97.7099 | 96.2406 | 91.0377 | 128 | 3 | 128 | 5 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m2_e1 | het | 95.8801 | 94.8148 | 96.9697 | 86.5990 | 128 | 7 | 128 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e0 | het | 94.8148 | 97.7099 | 92.0863 | 88.5691 | 128 | 3 | 128 | 11 | 6 | 54.5455 | |
| rpoplin-dv42 | INDEL | I6_15 | map_siren | het | 92.4188 | 89.5105 | 95.5224 | 83.4568 | 128 | 15 | 128 | 6 | 6 | 100.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m1_e0 | * | 65.8098 | 50.0000 | 96.2406 | 83.4577 | 129 | 129 | 128 | 5 | 4 | 80.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 91.3669 | 84.1060 | 100.0000 | 44.5887 | 127 | 24 | 128 | 0 | 0 | ||
| dgrover-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.1286 | 95.3020 | 96.9697 | 78.0731 | 142 | 7 | 128 | 4 | 2 | 50.0000 | |
| ckim-isaac | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 73.5901 | 72.3684 | 74.8538 | 88.1906 | 110 | 42 | 128 | 43 | 3 | 6.9767 | |
| anovak-vg | INDEL | D1_5 | map_l250_m1_e0 | * | 72.2457 | 74.2690 | 70.3297 | 96.0219 | 127 | 44 | 128 | 54 | 24 | 44.4444 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.7690 | 95.3020 | 96.2406 | 77.7219 | 142 | 7 | 128 | 5 | 3 | 60.0000 | |
| astatham-gatk | INDEL | I6_15 | map_siren | het | 93.7729 | 89.5105 | 98.4615 | 87.4396 | 128 | 15 | 128 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e0 | het | 95.5224 | 97.7099 | 93.4307 | 90.1722 | 128 | 3 | 128 | 9 | 2 | 22.2222 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.8244 | 61.6505 | 98.4615 | 58.8608 | 127 | 79 | 128 | 2 | 1 | 50.0000 | |
| bgallagher-sentieon | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.4289 | 94.6309 | 96.2406 | 77.3424 | 141 | 8 | 128 | 5 | 3 | 60.0000 | |
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 71.1111 | 76.1905 | 66.6667 | 71.4710 | 128 | 40 | 128 | 64 | 63 | 98.4375 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 98.4615 | 95.8586 | 0 | 0 | 128 | 2 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e0 | het | 96.5923 | 96.9466 | 96.2406 | 87.4882 | 127 | 4 | 128 | 5 | 1 | 20.0000 | |
| jli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.0935 | 93.2886 | 96.9697 | 75.4647 | 139 | 10 | 128 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 81.5562 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 75.2837 | 62.1359 | 95.4887 | 76.4184 | 128 | 78 | 127 | 6 | 4 | 66.6667 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 84.9584 | 74.7191 | 98.4496 | 67.6692 | 133 | 45 | 127 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 95.8491 | 96.9466 | 94.7761 | 92.5431 | 127 | 4 | 127 | 7 | 2 | 28.5714 | |
| ckim-dragen | INDEL | D6_15 | map_siren | homalt | 97.6923 | 97.6923 | 97.6923 | 86.7482 | 127 | 3 | 127 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m2_e0 | het | 94.0741 | 96.9466 | 91.3669 | 92.3416 | 127 | 4 | 127 | 12 | 2 | 16.6667 | |
| ckim-gatk | INDEL | D6_15 | map_siren | homalt | 98.4496 | 97.6923 | 99.2188 | 84.0994 | 127 | 3 | 127 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 95.4149 | 94.6309 | 96.2121 | 77.5128 | 141 | 8 | 127 | 5 | 3 | 60.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.0148 | 90.6040 | 97.6923 | 66.7519 | 135 | 14 | 127 | 3 | 1 | 33.3333 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 84.8330 | 85.0000 | 84.6667 | 87.5519 | 136 | 24 | 127 | 23 | 23 | 100.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 77.7614 | 75.7576 | 79.8742 | 91.5962 | 125 | 40 | 127 | 32 | 21 | 65.6250 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 81.8737 | 70.8571 | 96.9466 | 64.3052 | 124 | 51 | 127 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 89.3491 | 89.2617 | 89.4366 | 73.6549 | 133 | 16 | 127 | 15 | 9 | 60.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 91.0394 | 84.1060 | 99.2188 | 46.4435 | 127 | 24 | 127 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D6_15 | map_siren | homalt | 97.3180 | 97.6923 | 96.9466 | 82.5333 | 127 | 3 | 127 | 4 | 2 | 50.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | HG002compoundhet | het | 79.5908 | 79.8077 | 79.3750 | 86.5997 | 166 | 42 | 127 | 33 | 33 | 100.0000 | |
| hfeng-pmm3 | INDEL | D6_15 | map_l100_m2_e0 | het | 97.6923 | 96.9466 | 98.4496 | 87.9664 | 127 | 4 | 127 | 2 | 0 | 0.0000 | |