PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30551-30600 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 83.2624 | 73.7143 | 95.6522 | 64.2487 | 129 | 46 | 132 | 6 | 5 | 83.3333 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 39.0586 | 33.8542 | 46.1538 | 69.3790 | 130 | 254 | 132 | 154 | 146 | 94.8052 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 46.1571 | 30.4878 | 94.9640 | 69.3833 | 100 | 228 | 132 | 7 | 7 | 100.0000 | |
| mlin-fermikit | INDEL | I1_5 | map_l150_m2_e0 | het | 59.3258 | 42.7184 | 97.0588 | 85.5779 | 132 | 177 | 132 | 4 | 2 | 50.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 86.7676 | 77.5281 | 98.5075 | 65.9033 | 138 | 40 | 132 | 2 | 2 | 100.0000 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e0 | * | 53.6585 | 39.8792 | 81.9876 | 92.9540 | 132 | 199 | 132 | 29 | 21 | 72.4138 | |
| qzeng-custom | INDEL | D16_PLUS | map_siren | * | 50.9653 | 84.6154 | 36.4641 | 88.9936 | 121 | 22 | 132 | 230 | 13 | 5.6522 | |
| jli-custom | INDEL | D16_PLUS | map_siren | * | 94.6492 | 93.0070 | 96.3504 | 92.5503 | 133 | 10 | 132 | 5 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | map_l100_m2_e1 | het | 96.6925 | 97.0370 | 96.3504 | 87.3733 | 131 | 4 | 132 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 97.7778 | 86.8677 | 0 | 0 | 132 | 3 | 2 | 66.6667 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.7273 | 93.6620 | 100.0000 | 38.0282 | 133 | 9 | 132 | 0 | 0 | ||
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.4312 | 90.9091 | 73.7430 | 94.9535 | 130 | 13 | 132 | 47 | 9 | 19.1489 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 22.5601 | 18.5079 | 28.8840 | 55.7171 | 129 | 568 | 132 | 325 | 240 | 73.8462 | |
| ckim-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.6237 | 92.3077 | 97.0588 | 92.7312 | 132 | 11 | 132 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_siren | * | 87.4390 | 93.0070 | 82.5000 | 95.1981 | 133 | 10 | 132 | 28 | 3 | 10.7143 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0588 | 97.7778 | 96.3504 | 90.9631 | 132 | 3 | 132 | 5 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | map_siren | * | 91.3733 | 93.0070 | 89.7959 | 93.4812 | 133 | 10 | 132 | 15 | 1 | 6.6667 | |
| hfeng-pmm2 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0588 | 97.7778 | 96.3504 | 88.9159 | 132 | 3 | 132 | 5 | 1 | 20.0000 | |
| jlack-gatk | INDEL | I6_15 | map_siren | het | 91.9861 | 92.3077 | 91.6667 | 87.8583 | 132 | 11 | 132 | 12 | 1 | 8.3333 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 89.7959 | 81.9876 | 99.2481 | 34.4828 | 132 | 29 | 132 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | D6_15 | map_l100_m2_e1 | het | 94.6237 | 97.7778 | 91.6667 | 88.4430 | 132 | 3 | 132 | 12 | 7 | 58.3333 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 87.8698 | 84.3750 | 91.6667 | 85.3807 | 135 | 25 | 132 | 12 | 11 | 91.6667 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e1 | het | 76.7442 | 97.7778 | 63.1579 | 89.8936 | 132 | 3 | 132 | 77 | 71 | 92.2078 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 99.2366 | 98.4848 | 100.0000 | 80.0604 | 130 | 2 | 132 | 0 | 0 | ||
| gduggal-snapvard | SNP | * | tech_badpromoters | * | 88.3476 | 84.7134 | 92.3077 | 52.4917 | 133 | 24 | 132 | 11 | 2 | 18.1818 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e1 | het | 95.6522 | 97.7778 | 93.6170 | 90.0774 | 132 | 3 | 132 | 9 | 2 | 22.2222 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 75.4780 | 60.8939 | 99.2481 | 29.2553 | 109 | 70 | 132 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 95.2727 | 97.0370 | 93.5714 | 90.2643 | 131 | 4 | 131 | 9 | 2 | 22.2222 | |
| anovak-vg | SNP | tv | map_l250_m0_e0 | homalt | 79.5181 | 67.3575 | 97.0370 | 94.8157 | 130 | 63 | 131 | 4 | 3 | 75.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.7587 | 96.7213 | 90.9722 | 86.3636 | 118 | 4 | 131 | 13 | 10 | 76.9231 | |
| asubramanian-gatk | SNP | tv | map_l250_m2_e0 | homalt | 24.5318 | 13.9808 | 100.0000 | 97.9454 | 131 | 806 | 131 | 0 | 0 | ||
| cchapple-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.4090 | 0 | 0 | 131 | 0 | 0 | ||
| ckim-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 94.2446 | 97.0370 | 91.6084 | 92.2744 | 131 | 4 | 131 | 12 | 2 | 16.6667 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 93.9750 | 94.3820 | 93.5714 | 66.5072 | 84 | 5 | 131 | 9 | 2 | 22.2222 | |
| ndellapenna-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.7571 | 85.6250 | 87.9195 | 87.5626 | 137 | 23 | 131 | 18 | 10 | 55.5556 | |
| egarrison-hhga | INDEL | D6_15 | map_l100_m1_e0 | het | 94.2063 | 98.4127 | 90.3448 | 86.6236 | 124 | 2 | 131 | 14 | 9 | 64.2857 | |
| ckim-vqsr | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.2446 | 91.6084 | 97.0370 | 92.7807 | 131 | 12 | 131 | 4 | 3 | 75.0000 | |
| egarrison-hhga | INDEL | I6_15 | map_siren | het | 95.2727 | 91.6084 | 99.2424 | 83.0769 | 131 | 12 | 131 | 1 | 1 | 100.0000 | |
| dgrover-gatk | INDEL | D6_15 | map_l100_m2_e1 | het | 95.9707 | 97.0370 | 94.9275 | 90.5802 | 131 | 4 | 131 | 7 | 2 | 28.5714 | |
| ckim-isaac | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 90.9744 | 92.2581 | 89.7260 | 80.4813 | 143 | 12 | 131 | 15 | 3 | 20.0000 | |
| ckim-isaac | INDEL | D6_15 | map_l100_m2_e0 | * | 65.8291 | 50.0000 | 96.3235 | 84.3858 | 132 | 132 | 131 | 5 | 4 | 80.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 82.3899 | 73.5955 | 93.5714 | 59.8854 | 131 | 47 | 131 | 9 | 3 | 33.3333 | |
| eyeh-varpipe | INDEL | D6_15 | map_siren | homalt | 78.3526 | 87.6923 | 70.8108 | 81.7374 | 114 | 16 | 131 | 54 | 40 | 74.0741 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 70.1097 | 58.8235 | 86.7550 | 74.5791 | 30 | 21 | 131 | 20 | 8 | 40.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l100_m2_e1 | het | 77.2912 | 99.2593 | 63.2850 | 90.3316 | 134 | 1 | 131 | 76 | 63 | 82.8947 | |
| gduggal-bwaplat | INDEL | * | map_siren | hetalt | 69.1293 | 53.0364 | 99.2424 | 95.1860 | 131 | 116 | 131 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l150_m2_e1 | homalt | 69.1293 | 52.8226 | 100.0000 | 93.1414 | 131 | 117 | 131 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 87.6416 | 80.8917 | 95.6204 | 51.7606 | 127 | 30 | 131 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 88.6234 | 85.8268 | 91.6084 | 71.3427 | 109 | 18 | 131 | 12 | 5 | 41.6667 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 94.1701 | 92.7632 | 95.6204 | 90.4795 | 141 | 11 | 131 | 6 | 1 | 16.6667 | |