PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30501-30550 / 86044 show all | |||||||||||||||
| ckim-vqsr | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 94.0845 | 91.8750 | 96.4029 | 90.0144 | 147 | 13 | 134 | 5 | 4 | 80.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 76.3337 | 62.0112 | 99.2593 | 29.3194 | 111 | 68 | 134 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_siren | * | 93.3991 | 94.4056 | 92.4138 | 94.9653 | 135 | 8 | 134 | 11 | 2 | 18.1818 | |
| asubramanian-gatk | SNP | tv | map_l250_m2_e1 | homalt | 24.8148 | 14.1649 | 100.0000 | 97.9315 | 134 | 812 | 134 | 0 | 0 | ||
| anovak-vg | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 65.6904 | 70.9091 | 61.1872 | 88.2131 | 117 | 48 | 134 | 85 | 29 | 34.1176 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 76.1364 | 66.6667 | 88.7417 | 97.5582 | 2 | 1 | 134 | 17 | 1 | 5.8824 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.6996 | 93.7063 | 95.7143 | 92.5013 | 134 | 9 | 134 | 6 | 3 | 50.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | map_siren | * | 92.7526 | 94.4056 | 91.1565 | 94.8923 | 135 | 8 | 134 | 13 | 2 | 15.3846 | |
| jmaeng-gatk | INDEL | I6_15 | map_siren | het | 93.6620 | 93.0070 | 94.3262 | 88.6473 | 133 | 10 | 133 | 8 | 1 | 12.5000 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.0289 | 93.0070 | 99.2537 | 92.6856 | 133 | 10 | 133 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 67.1394 | 62.6794 | 72.2826 | 73.6011 | 131 | 78 | 133 | 51 | 50 | 98.0392 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 93.4142 | 91.2500 | 95.6835 | 86.3458 | 146 | 14 | 133 | 6 | 2 | 33.3333 | |
| jpowers-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 68.7985 | 61.1111 | 78.6982 | 64.0426 | 132 | 84 | 133 | 36 | 35 | 97.2222 | |
| ltrigg-rtg1 | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 76.9899 | 66.6667 | 91.0959 | 97.5650 | 2 | 1 | 133 | 13 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.7193 | 125 | 5 | 133 | 0 | 0 | ||
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.8075 | 92.5926 | 99.2537 | 72.1992 | 75 | 6 | 133 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | I6_15 | segdup | het | 99.6255 | 100.0000 | 99.2537 | 92.8034 | 83 | 0 | 133 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 76.3320 | 62.0112 | 99.2537 | 24.2938 | 111 | 68 | 133 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D6_15 | map_l100_m1_e0 | * | 53.8462 | 51.5504 | 56.3559 | 88.4200 | 133 | 125 | 133 | 103 | 60 | 58.2524 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 67.0371 | 50.6098 | 99.2537 | 54.5763 | 166 | 162 | 133 | 1 | 0 | 0.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 60.5449 | 60.3604 | 60.7306 | 57.8846 | 134 | 88 | 133 | 86 | 83 | 96.5116 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e1 | * | 53.7374 | 39.9399 | 82.0988 | 93.1530 | 133 | 200 | 133 | 29 | 21 | 72.4138 | |
| mlin-fermikit | INDEL | I1_5 | map_l125_m0_e0 | * | 57.0815 | 42.9032 | 85.2564 | 80.1020 | 133 | 177 | 133 | 23 | 21 | 91.3043 | |
| mlin-fermikit | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 87.3343 | 83.8710 | 91.0959 | 81.8408 | 130 | 25 | 133 | 13 | 13 | 100.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | map_siren | het | 96.0289 | 93.0070 | 99.2537 | 85.3392 | 133 | 10 | 133 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0289 | 93.6620 | 98.5185 | 45.3441 | 133 | 9 | 133 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | D16_PLUS | map_siren | * | 92.3827 | 93.7063 | 91.0959 | 92.6633 | 134 | 9 | 133 | 13 | 1 | 7.6923 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 91.4848 | 90.6250 | 92.3611 | 89.3727 | 145 | 15 | 133 | 11 | 2 | 18.1818 | |
| hfeng-pmm3 | INDEL | I6_15 | map_siren | het | 96.0289 | 93.0070 | 99.2537 | 83.7181 | 133 | 10 | 133 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e0 | * | 86.1910 | 84.9206 | 87.5000 | 87.6423 | 107 | 19 | 133 | 19 | 18 | 94.7368 | |
| eyeh-varpipe | INDEL | D6_15 | map_l125_m2_e1 | * | 85.9091 | 84.3750 | 87.5000 | 87.8981 | 108 | 20 | 133 | 19 | 18 | 94.7368 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 16.5137 | 9.1047 | 88.6667 | 60.4222 | 60 | 599 | 133 | 17 | 17 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 16.5137 | 9.1047 | 88.6667 | 60.4222 | 60 | 599 | 133 | 17 | 17 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m0_e0 | homalt | 63.7890 | 46.8310 | 100.0000 | 93.6576 | 133 | 151 | 133 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | map_l100_m2_e0 | het | 69.9557 | 88.5246 | 57.8261 | 79.7357 | 54 | 7 | 133 | 97 | 79 | 81.4433 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 50.4626 | 34.9887 | 90.4762 | 43.6782 | 155 | 288 | 133 | 14 | 11 | 78.5714 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 68.6210 | 61.1111 | 78.2353 | 64.0592 | 132 | 84 | 133 | 37 | 35 | 94.5946 | |
| ghariani-varprowl | INDEL | I6_15 | map_siren | het | 79.3596 | 91.6084 | 70.0000 | 86.6760 | 131 | 12 | 133 | 57 | 52 | 91.2281 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 72.9300 | 58.6592 | 96.3768 | 29.2308 | 105 | 74 | 133 | 5 | 4 | 80.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.0000 | 93.0070 | 97.0803 | 92.6304 | 133 | 10 | 133 | 4 | 3 | 75.0000 | |
| anovak-vg | INDEL | * | map_l150_m0_e0 | homalt | 74.0771 | 78.6585 | 70.0000 | 91.3793 | 129 | 35 | 133 | 57 | 53 | 92.9825 | |
| astatham-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.0000 | 93.0070 | 97.0803 | 92.6620 | 133 | 10 | 133 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.7241 | 97.0414 | 53.2000 | 69.5122 | 164 | 5 | 133 | 117 | 117 | 100.0000 | |
| raldana-dualsentieon | INDEL | I6_15 | map_siren | het | 96.0289 | 93.0070 | 99.2537 | 81.6689 | 133 | 10 | 133 | 1 | 0 | 0.0000 | |
| dgrover-gatk | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.0000 | 93.0070 | 97.0803 | 92.7552 | 133 | 10 | 133 | 4 | 3 | 75.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 76.3320 | 62.0112 | 99.2537 | 24.2938 | 111 | 68 | 133 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 63.7790 | 63.3136 | 64.2512 | 66.5049 | 107 | 62 | 133 | 74 | 74 | 100.0000 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 62.4562 | 45.8781 | 97.7941 | 50.0000 | 128 | 151 | 133 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m0_e0 | het | 77.7518 | 64.8515 | 97.0588 | 93.4772 | 131 | 71 | 132 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m2_e0 | homalt | 70.4000 | 54.5455 | 99.2481 | 84.0144 | 132 | 110 | 132 | 1 | 1 | 100.0000 | |