PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
3001-3050 / 86044 show all
ckim-gatkSNPtimap_l100_m1_e0het
92.7314
88.0536
97.9342
80.4366
2636535772635855660
10.7914
gduggal-snapvardSNP*map_l100_m2_e1homalt
98.0418
96.3556
99.7880
62.8493
267831013263575643
76.7857
gduggal-bwafbINDEL*HG002complexvarhomalt
97.6327
97.4544
97.8116
53.5251
2633968826326589564
95.7555
cchapple-customSNP*map_l100_m1_e0homalt
98.7154
97.4707
99.9924
55.8509
263206832631022
100.0000
jmaeng-gatkSNPtimap_l100_m1_e0het
92.5822
87.8732
97.8244
80.8303
2631136312630458555
9.4017
anovak-vgSNP*map_l125_m2_e0het
77.4707
90.4768
67.7339
78.1138
26526279226255125072731
21.8358
ckim-isaacSNP*map_l125_m1_e0*
73.2800
57.9125
99.7492
70.8000
2625019077262526616
24.2424
gduggal-snapfbSNP*map_l100_m1_e0homalt
98.4097
97.1633
99.6885
68.9633
26237766262398229
35.3659
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
65.7740
85.6857
53.3715
63.8640
261174363262232291022642
98.8302
jpowers-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
65.7740
85.6857
53.3715
63.8640
261174363262232291022642
98.8302
ciseli-customINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
91.5338
92.8273
90.2759
58.4295
2623320272618028201567
55.5674
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
94.2166
90.2898
98.5006
65.6575
2592427882614639831
7.7889
ckim-isaacSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.2166
90.2898
98.5006
65.6575
2592427882614639831
7.7889
eyeh-varpipeSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.1234
99.6134
96.6774
60.9972
275711072612989885
9.4655
mlin-fermikitSNP*map_l100_m2_e0het
71.6803
56.3051
98.6068
57.9033
26125202742611736911
2.9810
gduggal-snapvardSNP*map_l100_m2_e0homalt
98.0484
96.3703
99.7860
62.8472
26524999261075643
76.7857
anovak-vgSNPtimap_l125_m2_e0*
81.4788
86.9291
76.6717
75.9478
2630339552608679371770
22.3006
eyeh-varpipeINDEL*HG002complexvarhomalt
93.9842
95.4231
92.5880
51.8445
2579012372607020872039
97.7000
ckim-isaacSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.1945
93.5761
98.9636
58.8872
25900177826068273187
68.4982
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
92.1518
91.8431
92.4625
82.8802
263702342260552124340
16.0075
gduggal-bwavardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
92.1518
91.8431
92.4625
82.8802
263702342260552124340
16.0075
asubramanian-gatkSNPtvmap_siren*
72.2865
56.6449
99.8618
75.5276
2601719913260113612
33.3333
anovak-vgSNP*map_l150_m1_e0*
79.3251
85.8375
73.7311
78.7422
2627443352597492542118
22.8874
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
89.4545
89.1929
89.7177
61.8267
2718632942596729762168
72.8495
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
89.4545
89.1929
89.7177
61.8267
2718632942596729762168
72.8495
eyeh-varpipeSNP*map_l100_m1_e0homalt
99.8701
99.8556
99.8846
63.0607
2696439259623016
53.3333
anovak-vgINDEL*HG002complexvarhomalt
75.7278
94.2021
63.3115
49.8629
254601567259401503214199
94.4585
mlin-fermikitINDEL*HG002complexvarhomalt
95.7600
96.3222
95.2043
55.1307
260339942592713061267
97.0138
ckim-vqsrSNP*map_l125_m2_e1*
70.6297
54.9235
98.9163
88.7326
2592521277259222846
2.1127
gduggal-bwavardSNP*map_l100_m1_e0homalt
98.6152
97.3744
99.8881
60.4751
26294709258782923
79.3103
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
82.8791
91.0940
76.0233
83.7724
261542557258548154268
3.2867
gduggal-snapvardSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
82.8791
91.0940
76.0233
83.7724
261542557258548154268
3.2867
astatham-gatkSNP*map_l150_m1_e0*
91.4460
84.4686
99.6799
78.7872
258554754258498339
46.9880
ckim-dragenSNP*HG002compoundhet*
99.7929
99.7831
99.8027
41.5217
2576656258045126
50.9804
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_diTR_11to50het
92.5067
90.7170
94.3684
38.1735
1429714632577215381472
95.7087
dgrover-gatkSNP*HG002compoundhet*
99.8063
99.8102
99.8025
41.2435
2577349257665136
70.5882
bgallagher-sentieonSNP*HG002compoundhet*
99.8063
99.8025
99.8102
41.0420
2577151257644925
51.0204
jli-customSNP*HG002compoundhet*
99.7328
99.7599
99.7058
41.1267
2576062257577636
47.3684
jlack-gatkSNP*HG002compoundhet*
99.5417
99.7018
99.3822
42.1778
25745772573816046
28.7500
rpoplin-dv42SNP*HG002compoundhet*
99.6493
99.5895
99.7091
40.7188
25716106257077561
81.3333
gduggal-bwafbSNP*HG002compoundhet*
97.9194
99.0744
96.7911
45.9764
2558323925699852222
26.0563
astatham-gatkSNPtimap_l125_m2_e1*
91.2494
84.0525
99.7941
76.0425
256944875256905329
54.7170
cchapple-customINDELI6_15**
97.7435
96.8215
98.6833
49.3635
2403478925632342305
89.1813
gduggal-snapplatSNP*map_l100_m2_e1homalt
95.9332
92.2507
99.9220
63.8706
256422154256252015
75.0000
dgrover-gatkINDELD6_15**
98.3523
98.1412
98.5642
55.1444
2560748525606373340
91.1528
gduggal-snapvardSNP*map_l100_m1_e0homalt
98.0408
96.3523
99.7895
60.4906
26018985256055441
75.9259
qzeng-customSNP*HG002compoundhet*
98.2824
98.1489
98.4164
46.9711
2534447825604412148
35.9223
jli-customINDELD6_15**
98.6381
98.1220
99.1595
51.2932
2560249025602217202
93.0876
astatham-gatkINDELD6_15**
98.2985
98.0875
98.5103
54.9898
2559349925592387347
89.6641
gduggal-snapfbSNP*HG002compoundhet*
83.3987
98.0094
72.5790
48.5976
25308514255799664581
6.0120