PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30251-30300 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.5017 | 91.3907 | 100.0000 | 49.1228 | 138 | 13 | 145 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.6395 | 97.9730 | 99.3151 | 86.1611 | 145 | 3 | 145 | 1 | 1 | 100.0000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 95.4254 | 93.0070 | 97.9730 | 92.5963 | 133 | 10 | 145 | 3 | 0 | 0.0000 | |
| anovak-vg | INDEL | I6_15 | map_siren | * | 52.3607 | 48.1967 | 57.3123 | 74.7000 | 147 | 158 | 145 | 108 | 71 | 65.7407 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.5017 | 91.3907 | 100.0000 | 45.4887 | 138 | 13 | 145 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.3051 | 97.9730 | 98.6395 | 87.1166 | 145 | 3 | 145 | 2 | 2 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 86.0339 | 92.9032 | 80.1105 | 83.0206 | 144 | 11 | 145 | 36 | 36 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.6858 | 98.0645 | 99.3151 | 81.1856 | 152 | 3 | 145 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_siren | het | 82.4328 | 77.6224 | 87.8788 | 67.1968 | 111 | 32 | 145 | 20 | 18 | 90.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m0_e0 | homalt | 97.2926 | 96.6216 | 97.9730 | 91.7226 | 143 | 5 | 145 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 66.4101 | 59.5041 | 75.1295 | 58.0435 | 144 | 98 | 145 | 48 | 41 | 85.4167 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 41.1854 | 27.9851 | 77.9570 | 49.7297 | 150 | 386 | 145 | 41 | 41 | 100.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.3051 | 97.9730 | 98.6395 | 87.7704 | 145 | 3 | 145 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | HG002compoundhet | het | 32.8633 | 69.2308 | 21.5453 | 64.8197 | 144 | 64 | 145 | 528 | 493 | 93.3712 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.6395 | 97.9730 | 99.3151 | 87.6166 | 145 | 3 | 145 | 1 | 1 | 100.0000 | |
| egarrison-hhga | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 91.8079 | 86.9048 | 97.2973 | 76.0905 | 146 | 22 | 144 | 4 | 3 | 75.0000 | |
| ckim-isaac | INDEL | I6_15 | map_siren | * | 63.4176 | 46.8852 | 97.9592 | 84.2105 | 143 | 162 | 144 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 67.2854 | 50.6993 | 100.0000 | 38.7234 | 145 | 141 | 144 | 0 | 0 | ||
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 64.1521 | 78.2895 | 54.3396 | 87.4882 | 119 | 33 | 144 | 121 | 38 | 31.4050 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 92.2724 | 89.9329 | 94.7368 | 76.4706 | 134 | 15 | 144 | 8 | 4 | 50.0000 | |
| astatham-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 96.6443 | 94.7368 | 98.6301 | 91.5704 | 144 | 8 | 144 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 90.3469 | 83.8323 | 97.9592 | 70.6587 | 140 | 27 | 144 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | C1_5 | HG002compoundhet | * | 0.0000 | 0.0000 | 48.4848 | 84.1346 | 0 | 1 | 144 | 153 | 45 | 29.4118 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 90.2821 | 100.0000 | 82.2857 | 92.5373 | 1 | 0 | 144 | 31 | 9 | 29.0323 | |
| eyeh-varpipe | INDEL | C6_15 | HG002complexvar | het | 98.2935 | 100.0000 | 96.6443 | 81.6953 | 4 | 0 | 144 | 5 | 5 | 100.0000 | |
| eyeh-varpipe | INDEL | D6_15 | map_l100_m1_e0 | het | 91.9902 | 92.8571 | 91.1392 | 82.1469 | 117 | 9 | 144 | 14 | 13 | 92.8571 | |
| eyeh-varpipe | INDEL | D6_15 | segdup | * | 76.3001 | 73.2984 | 79.5580 | 91.7314 | 140 | 51 | 144 | 37 | 36 | 97.2973 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 83.4783 | 85.7143 | 81.3559 | 70.4013 | 42 | 7 | 144 | 33 | 30 | 90.9091 | |
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.8938 | 71.8447 | 97.9592 | 42.5781 | 148 | 58 | 144 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m0_e0 | homalt | 98.2935 | 97.2973 | 99.3103 | 79.6919 | 144 | 4 | 144 | 1 | 1 | 100.0000 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 31.1207 | 23.8636 | 44.7205 | 61.1580 | 147 | 469 | 144 | 178 | 166 | 93.2584 | |
| ckim-isaac | INDEL | * | map_siren | hetalt | 73.9743 | 59.9190 | 96.6443 | 83.7336 | 148 | 99 | 144 | 5 | 4 | 80.0000 | |
| cchapple-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 92.7323 | 87.5000 | 98.6301 | 33.6364 | 21 | 3 | 144 | 2 | 1 | 50.0000 | |
| cchapple-custom | INDEL | D6_15 | segdup | het | 98.3425 | 96.7391 | 100.0000 | 93.1979 | 89 | 3 | 144 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 15.8160 | 8.6076 | 97.2973 | 51.3158 | 204 | 2166 | 144 | 4 | 4 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 76.1553 | 85.1190 | 68.8995 | 75.1486 | 143 | 25 | 144 | 65 | 61 | 93.8462 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 54.3836 | 87.5000 | 39.4521 | 89.5744 | 133 | 19 | 144 | 221 | 4 | 1.8100 | |
| gduggal-snapplat | SNP | tv | map_l250_m0_e0 | homalt | 85.4599 | 74.6114 | 100.0000 | 95.3201 | 144 | 49 | 144 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 43.5045 | 31.1688 | 72.0000 | 59.1837 | 144 | 318 | 144 | 56 | 49 | 87.5000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m0_e0 | homalt | 97.9592 | 97.2973 | 98.6301 | 85.5015 | 144 | 4 | 144 | 2 | 2 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.2581 | 85.6287 | 100.0000 | 64.9635 | 143 | 24 | 144 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 95.0495 | 94.1176 | 96.0000 | 76.9231 | 144 | 9 | 144 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 97.3309 | 96.7105 | 97.9592 | 91.2343 | 147 | 5 | 144 | 3 | 2 | 66.6667 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.5063 | 86.6667 | 94.7020 | 88.3308 | 143 | 22 | 143 | 8 | 6 | 75.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 79.6385 | 80.2817 | 79.0055 | 39.4649 | 114 | 28 | 143 | 38 | 18 | 47.3684 | |
| anovak-vg | INDEL | I1_5 | map_l150_m1_e0 | het | 51.0679 | 42.8094 | 63.2743 | 93.1411 | 128 | 171 | 143 | 83 | 7 | 8.4337 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.2052 | 83.8323 | 100.0000 | 62.7604 | 140 | 27 | 143 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 82.6590 | 71.5000 | 97.9452 | 72.2960 | 143 | 57 | 143 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | segdup | * | 90.0543 | 82.8571 | 98.6207 | 95.0257 | 145 | 30 | 143 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 40.7252 | 25.5692 | 100.0000 | 61.8667 | 146 | 425 | 143 | 0 | 0 | ||