PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29601-29650 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I6_15 | segdup | * | 98.5507 | 97.1429 | 100.0000 | 91.9469 | 170 | 5 | 170 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 74.4043 | 72.9730 | 75.8929 | 83.4686 | 162 | 60 | 170 | 54 | 48 | 88.8889 | |
| ghariani-varprowl | INDEL | I1_5 | func_cds | * | 94.1828 | 94.4444 | 93.9227 | 43.4375 | 170 | 10 | 170 | 11 | 7 | 63.6364 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m1_e0 | * | 68.3429 | 66.2791 | 70.5394 | 88.5238 | 171 | 87 | 170 | 71 | 65 | 91.5493 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m0_e0 | homalt | 86.6295 | 80.7692 | 93.4066 | 89.1538 | 168 | 40 | 170 | 12 | 1 | 8.3333 | |
| eyeh-varpipe | INDEL | I1_5 | map_l250_m1_e0 | * | 97.1563 | 97.1698 | 97.1429 | 94.7130 | 103 | 3 | 170 | 5 | 4 | 80.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 73.9130 | 59.4406 | 97.7011 | 62.3377 | 170 | 116 | 170 | 4 | 4 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l250_m2_e0 | * | 95.7507 | 91.8478 | 100.0000 | 92.2161 | 169 | 15 | 170 | 0 | 0 | ||
| jli-custom | INDEL | I6_15 | segdup | * | 98.5507 | 97.1429 | 100.0000 | 91.7715 | 170 | 5 | 170 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.9827 | 98.8372 | 97.1429 | 80.2036 | 170 | 2 | 170 | 5 | 1 | 20.0000 | |
| jpowers-varprowl | INDEL | * | map_l250_m1_e0 | het | 90.4255 | 89.4737 | 91.3978 | 96.9623 | 170 | 20 | 170 | 16 | 10 | 62.5000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m1_e0 | * | 97.4212 | 99.4152 | 95.5056 | 95.3670 | 170 | 1 | 170 | 8 | 1 | 12.5000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e1 | * | 69.0673 | 61.0909 | 79.4393 | 85.8746 | 168 | 107 | 170 | 44 | 27 | 61.3636 | |
| anovak-vg | INDEL | I1_5 | segdup | het | 40.6839 | 28.2528 | 72.6496 | 97.2794 | 152 | 386 | 170 | 64 | 21 | 32.8125 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l250_m1_e0 | * | 96.8661 | 99.4152 | 94.4444 | 95.1987 | 170 | 1 | 170 | 10 | 1 | 10.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.9592 | 96.0000 | 100.0000 | 67.2447 | 168 | 7 | 170 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 91.8919 | 86.2944 | 98.2659 | 34.2205 | 170 | 27 | 170 | 3 | 2 | 66.6667 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m0_e0 | * | 97.1429 | 96.5909 | 97.7011 | 92.2529 | 170 | 6 | 170 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m0_e0 | * | 95.7635 | 96.0227 | 95.5056 | 89.8575 | 169 | 7 | 170 | 8 | 1 | 12.5000 | |
| rpoplin-dv42 | INDEL | I6_15 | segdup | * | 98.2659 | 97.1429 | 99.4152 | 91.3984 | 170 | 5 | 170 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 94.9438 | 95.4802 | 94.4134 | 70.5107 | 169 | 8 | 169 | 10 | 9 | 90.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 96.8316 | 94.3820 | 99.4118 | 82.3468 | 168 | 10 | 169 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.6553 | 94.0476 | 99.4118 | 79.9292 | 158 | 10 | 169 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | C1_5 | HG002complexvar | * | 63.2248 | 71.4286 | 56.7114 | 83.4812 | 5 | 2 | 169 | 129 | 19 | 14.7287 | |
| anovak-vg | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 33.7398 | 28.1768 | 42.0398 | 49.5609 | 102 | 260 | 169 | 233 | 185 | 79.3991 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m0_e0 | * | 96.8349 | 95.4545 | 98.2558 | 92.5054 | 168 | 8 | 169 | 3 | 2 | 66.6667 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.5423 | 98.2558 | 98.8304 | 81.6327 | 169 | 3 | 169 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m1_e0 | homalt | 68.1452 | 51.6820 | 100.0000 | 91.3951 | 169 | 158 | 169 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I6_15 | map_l100_m1_e0 | * | 76.4706 | 68.4211 | 86.6667 | 74.6424 | 78 | 36 | 169 | 26 | 24 | 92.3077 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 76.6232 | 94.3503 | 64.5038 | 70.1595 | 167 | 10 | 169 | 93 | 88 | 94.6237 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 43.3030 | 29.1607 | 84.0796 | 50.0000 | 205 | 498 | 169 | 32 | 7 | 21.8750 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 35.0259 | 100.0000 | 21.2312 | 82.4631 | 1 | 0 | 169 | 627 | 43 | 6.8581 | |
| jpowers-varprowl | INDEL | D1_5 | map_l250_m2_e1 | * | 93.1129 | 91.3514 | 94.9438 | 95.8431 | 169 | 16 | 169 | 9 | 4 | 44.4444 | |
| jpowers-varprowl | INDEL | I1_5 | func_cds | * | 94.9438 | 93.8889 | 96.0227 | 35.7664 | 169 | 11 | 169 | 7 | 7 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | HG002compoundhet | * | 2.5440 | 1.9257 | 3.7472 | 39.3654 | 169 | 8607 | 169 | 4341 | 4310 | 99.2859 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.8333 | 94.9153 | 98.8304 | 69.3548 | 168 | 9 | 169 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m0_e0 | * | 95.4802 | 96.0227 | 94.9438 | 94.8196 | 169 | 7 | 169 | 9 | 1 | 11.1111 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.7598 | 91.0112 | 98.8304 | 71.4047 | 162 | 16 | 169 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.6608 | 95.4286 | 100.0000 | 65.0104 | 167 | 8 | 169 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.9438 | 90.8602 | 99.4118 | 70.1230 | 169 | 17 | 169 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | I6_15 | segdup | * | 95.7507 | 96.5714 | 94.9438 | 93.8621 | 169 | 6 | 169 | 9 | 1 | 11.1111 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l250_m1_e0 | * | 97.9710 | 98.8304 | 97.1264 | 94.1037 | 169 | 2 | 169 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 97.6608 | 95.4286 | 100.0000 | 67.1845 | 167 | 8 | 169 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.9438 | 90.8602 | 99.4118 | 70.1230 | 169 | 17 | 169 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.5337 | 97.6744 | 99.4083 | 80.0236 | 168 | 4 | 168 | 1 | 1 | 100.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 94.6479 | 90.3226 | 99.4083 | 69.9288 | 168 | 18 | 168 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m1_e0 | * | 89.6000 | 98.2456 | 82.3529 | 96.3309 | 168 | 3 | 168 | 36 | 1 | 2.7778 | |
| ghariani-varprowl | INDEL | I1_5 | map_l150_m0_e0 | * | 93.8547 | 95.4545 | 92.3077 | 94.3089 | 168 | 8 | 168 | 14 | 4 | 28.5714 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 82.0654 | 92.0904 | 74.0088 | 72.2494 | 163 | 14 | 168 | 59 | 57 | 96.6102 | |
| astatham-gatk | INDEL | D1_5 | map_l250_m1_e0 | * | 96.0000 | 98.2456 | 93.8547 | 95.4775 | 168 | 3 | 168 | 11 | 1 | 9.0909 | |