PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
29351-29400 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | tv | map_l250_m0_e0 | homalt | 95.4907 | 93.2642 | 97.8261 | 94.7020 | 180 | 13 | 180 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | func_cds | * | 98.6301 | 100.0000 | 97.2973 | 39.7394 | 180 | 0 | 180 | 5 | 0 | 0.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 53.6324 | 61.8056 | 47.3684 | 65.3285 | 178 | 110 | 180 | 200 | 197 | 98.5000 | |
| jpowers-varprowl | INDEL | I6_15 | map_siren | * | 66.5799 | 58.6885 | 76.9231 | 81.1897 | 179 | 126 | 180 | 54 | 53 | 98.1481 | |
| ltrigg-rtg1 | INDEL | I1_5 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 25.9259 | 180 | 0 | 180 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 66.2963 | 49.5845 | 100.0000 | 63.9279 | 179 | 182 | 180 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e1 | * | 93.5065 | 97.2973 | 90.0000 | 97.0803 | 180 | 5 | 180 | 20 | 1 | 5.0000 | |
| jli-custom | INDEL | D1_5 | map_l250_m2_e1 | * | 97.0350 | 97.2973 | 96.7742 | 95.1360 | 180 | 5 | 180 | 6 | 1 | 16.6667 | |
| jli-custom | INDEL | I1_5 | func_cds | * | 100.0000 | 100.0000 | 100.0000 | 32.8358 | 180 | 0 | 180 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | map_l150_m0_e0 | homalt | 23.8727 | 13.5542 | 100.0000 | 95.9331 | 180 | 1148 | 180 | 0 | 0 | ||
| asubramanian-gatk | INDEL | D6_15 | segdup | * | 96.0000 | 94.2408 | 97.8261 | 94.5287 | 180 | 11 | 180 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | func_cds | * | 99.1720 | 99.4444 | 98.9011 | 44.5122 | 179 | 1 | 180 | 2 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | func_cds | * | 99.4460 | 99.4444 | 99.4475 | 34.6570 | 179 | 1 | 180 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | D6_15 | segdup | * | 96.0000 | 94.2408 | 97.8261 | 92.8377 | 180 | 11 | 180 | 4 | 2 | 50.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | func_cds | * | 99.7214 | 99.4444 | 100.0000 | 35.2518 | 179 | 1 | 180 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | func_cds | * | 99.7214 | 99.4444 | 100.0000 | 33.8235 | 179 | 1 | 180 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e1 | * | 98.0926 | 97.2973 | 98.9011 | 95.4850 | 180 | 5 | 180 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 91.8367 | 87.8049 | 96.2567 | 84.7844 | 180 | 25 | 180 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 91.8367 | 87.8049 | 96.2567 | 84.7844 | 180 | 25 | 180 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | I1_5 | func_cds | * | 99.7214 | 99.4444 | 100.0000 | 35.4839 | 179 | 1 | 180 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I1_5 | func_cds | * | 99.1720 | 99.4444 | 98.9011 | 32.5926 | 179 | 1 | 180 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | het | 95.4667 | 94.2105 | 96.7568 | 95.6957 | 179 | 11 | 179 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l250_m2_e0 | * | 98.0822 | 97.2826 | 98.8950 | 95.4061 | 179 | 5 | 179 | 2 | 1 | 50.0000 | |
| ciseli-custom | SNP | * | HG002complexvar | hetalt | 70.4724 | 57.7419 | 90.4040 | 39.8176 | 179 | 131 | 179 | 19 | 9 | 47.3684 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 32.0359 | 80.0905 | 20.0224 | 83.6832 | 177 | 44 | 179 | 715 | 42 | 5.8741 | |
| ciseli-custom | SNP | tv | HG002complexvar | hetalt | 70.4724 | 57.7419 | 90.4040 | 39.8176 | 179 | 131 | 179 | 19 | 9 | 47.3684 | |
| ckim-isaac | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 80.9122 | 68.7259 | 98.3516 | 52.7273 | 178 | 81 | 179 | 3 | 3 | 100.0000 | |
| ckim-isaac | SNP | ti | HG002complexvar | hetalt | 92.7461 | 86.4734 | 100.0000 | 28.1124 | 179 | 28 | 179 | 0 | 0 | ||
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 85.8513 | 89.0547 | 82.8704 | 80.0000 | 179 | 22 | 179 | 37 | 34 | 91.8919 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e1 | * | 97.2826 | 96.7568 | 97.8142 | 95.4658 | 179 | 6 | 179 | 4 | 2 | 50.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 92.0308 | 95.2128 | 89.0547 | 65.6410 | 179 | 9 | 179 | 22 | 18 | 81.8182 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 81.7352 | 100.0000 | 69.1120 | 78.6831 | 155 | 0 | 179 | 80 | 5 | 6.2500 | |
| raldana-dualsentieon | INDEL | * | map_l250_m1_e0 | het | 93.2292 | 94.2105 | 92.2680 | 95.0218 | 179 | 11 | 179 | 15 | 1 | 6.6667 | |
| mlin-fermikit | INDEL | I1_5 | func_cds | * | 99.1690 | 99.4444 | 98.8950 | 25.5144 | 179 | 1 | 179 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I6_15 | HG002compoundhet | * | 2.5796 | 2.0283 | 3.5425 | 37.8475 | 178 | 8598 | 179 | 4874 | 4796 | 98.3997 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e0 | * | 97.8142 | 97.2826 | 98.3516 | 95.3737 | 179 | 5 | 179 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 91.5601 | 89.5000 | 93.7173 | 65.2095 | 179 | 21 | 179 | 12 | 12 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 58.0656 | 77.6423 | 46.3731 | 78.9760 | 191 | 55 | 179 | 207 | 152 | 73.4300 | |
| ghariani-varprowl | INDEL | D6_15 | map_l100_m2_e1 | * | 67.6145 | 65.4545 | 69.9219 | 89.0552 | 180 | 95 | 179 | 77 | 71 | 92.2078 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e1 | * | 95.2128 | 96.7568 | 93.7173 | 95.2381 | 179 | 6 | 179 | 12 | 1 | 8.3333 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m2_e1 | * | 75.6012 | 62.9091 | 94.7090 | 81.7919 | 173 | 102 | 179 | 10 | 9 | 90.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 88.8337 | 89.5000 | 88.1773 | 74.9692 | 179 | 21 | 179 | 24 | 8 | 33.3333 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m0_e0 | het | 92.5065 | 93.2292 | 91.7949 | 87.1287 | 179 | 13 | 179 | 16 | 2 | 12.5000 | |
| jli-custom | INDEL | D1_5 | map_l250_m2_e0 | * | 97.0190 | 97.2826 | 96.7568 | 95.0508 | 179 | 5 | 179 | 6 | 1 | 16.6667 | |
| jmaeng-gatk | INDEL | D1_5 | map_l250_m2_e0 | * | 93.4726 | 97.2826 | 89.9497 | 97.0218 | 179 | 5 | 179 | 20 | 1 | 5.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.5017 | 91.3907 | 100.0000 | 45.7576 | 138 | 13 | 179 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | HG002complexvar | hetalt | 88.4177 | 83.7117 | 93.6842 | 66.0714 | 848 | 165 | 178 | 12 | 12 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m0_e0 | het | 95.9569 | 92.7083 | 99.4413 | 88.6493 | 178 | 14 | 178 | 1 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l250_m2_e0 | * | 97.2678 | 96.7391 | 97.8022 | 95.3842 | 178 | 6 | 178 | 4 | 2 | 50.0000 | |
| ckim-vqsr | INDEL | * | map_l250_m1_e0 | het | 90.3553 | 93.6842 | 87.2549 | 97.7493 | 178 | 12 | 178 | 26 | 1 | 3.8462 | |