PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
2851-2900 / 86044 show all
ciseli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
88.2783
97.3461
80.7559
60.7530
27217742274786548433
6.6127
gduggal-bwavardSNP*map_l125_m1_e0het
94.0558
97.9149
90.4894
82.0185
27800592274782888162
5.6094
gduggal-snapplatSNP*map_l125_m2_e0het
93.8347
93.6353
94.0349
85.0059
274521866274771743925
53.0694
anovak-vgSNPtimap_l100_m2_e0het
80.8461
90.4056
73.1149
73.2980
27684293827470101012208
21.8592
gduggal-snapplatSNPtvmap_sirenhet
96.1131
95.9558
96.2709
75.9094
274521157274681064479
45.0188
egarrison-hhgaSNP*map_l100_m2_e0homalt
99.8491
99.7675
99.9309
63.4300
2745964274591918
94.7368
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
85.2884
84.6243
85.9630
70.3947
2707349192745444834096
91.3674
ltrigg-rtg1SNP*map_l100_m2_e0homalt
99.8182
99.7420
99.8945
62.4790
2745271274512926
89.6552
ndellapenna-hhgaSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4006
99.1437
99.6587
62.2119
27441237274499460
63.8298
raldana-dualsentieonSNP*map_l100_m2_e0homalt
99.8291
99.7275
99.9308
59.5568
2744875274481915
78.9474
ltrigg-rtg2SNP*map_l100_m2_e0homalt
99.8108
99.6875
99.9344
60.3899
2743786274351816
88.8889
bgallagher-sentieonSNP*map_l100_m2_e0homalt
99.7908
99.6657
99.9162
60.2352
2743192274312318
78.2609
jli-customSNP*map_l100_m2_e0homalt
99.7944
99.6512
99.9381
59.7123
2742796274271716
94.1176
ndellapenna-hhgaSNP*map_l100_m2_e0homalt
99.7835
99.6512
99.9162
62.4810
2742796274272321
91.3043
anovak-vgINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
91.9743
92.1019
91.8470
57.2556
2602822322742024341757
72.1857
jpowers-varprowlSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.9092
98.7644
97.0687
69.5742
2733634227419828294
35.5072
asubramanian-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0957
98.9522
99.2395
65.0592
273882902740321022
10.4762
eyeh-varpipeSNP*map_l125_m1_e0het
98.1718
99.6126
96.7721
75.4925
282821102740291428
3.0635
hfeng-pmm3SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4756
99.0317
99.9234
63.0172
2741026827401218
38.0952
anovak-vgSNP*map_l150_m2_e1*
79.7323
86.0571
74.2735
80.0613
2771944912739894902194
23.1191
raldana-dualsentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3348
99.0173
99.6544
63.3928
27406272273979513
13.6842
hfeng-pmm1SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4519
98.9956
99.9125
62.9106
27400278273912410
41.6667
eyeh-varpipeSNP*segdup*
98.2314
99.8753
96.6407
90.4939
28032352738795222
2.3109
ciseli-customINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
76.6853
89.2624
67.2148
71.4466
274583303273861335811870
88.8606
dgrover-gatkSNP*map_l100_m2_e0homalt
99.7105
99.4986
99.9234
60.6643
27385138273852116
76.1905
rpoplin-dv42SNP*map_l100_m2_e0homalt
99.6325
99.4768
99.7886
63.6376
27379144273805854
93.1034
astatham-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4245
98.9414
99.9124
64.7733
27385293273762414
58.3333
gduggal-bwavardINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
96.9824
96.8153
97.1501
58.2231
2736090027373803642
79.9502
hfeng-pmm2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3792
98.9089
99.8541
63.0972
2737630227367407
17.5000
ckim-dragenSNP*map_l100_m2_e0homalt
99.6377
99.4114
99.8650
58.3933
27361162273663733
89.1892
ckim-gatkSNPtimap_l100_m2_e1het
92.9104
88.4076
97.8964
81.4552
2737135892736458862
10.5442
jpowers-varprowlSNP*map_l125_m1_e0het
96.6905
96.3687
97.0145
77.6907
27361103127361842242
28.7411
mlin-fermikitSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
97.8660
97.7360
97.9964
54.8200
2732663327341559392
70.1252
mlin-fermikitSNP*segdup*
98.0230
97.4311
98.6220
85.8156
2734672127340382136
35.6021
astatham-gatkSNP*map_l100_m2_e0homalt
99.6137
99.3169
99.9123
60.3292
27335188273352419
79.1667
gduggal-bwafbSNP*map_l100_m2_e0homalt
99.5956
99.3169
99.8758
64.6135
27335188273353420
58.8235
ckim-isaacSNP*map_l125_m2_e0*
73.7324
58.4787
99.7518
72.8403
2732319400273256816
23.5294
jmaeng-gatkSNPtimap_l100_m2_e1het
92.7795
88.2397
97.8118
81.8240
2731936412731261156
9.1653
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
89.5433
87.3487
91.8510
85.8019
272033940272882421244
10.0785
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
89.5433
87.3487
91.8510
85.8019
272033940272882421244
10.0785
ghariani-varprowlINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
96.3238
96.5464
96.1023
63.4311
27284976272701106763
68.9873
jpowers-varprowlSNP*map_l100_m2_e0homalt
99.3403
99.0226
99.6599
66.2832
27254269272549368
73.1183
ghariani-varprowlSNP*map_l100_m2_e0homalt
99.3166
99.0008
99.6343
64.4739
272482752724810067
67.0000
jlack-gatkSNP*map_l100_m2_e0homalt
99.3957
98.8991
99.8972
61.0320
27220303272202822
78.5714
anovak-vgSNP*segdup*
97.8173
97.8231
97.8116
92.2860
2745661127219609236
38.7521
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
76.7889
93.7761
65.0122
76.1162
2692517872721814648266
1.8160
ciseli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
76.7889
93.7761
65.0122
76.1162
2692517872721814648266
1.8160
gduggal-bwafbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
93.1643
88.4244
98.4410
44.1529
12925169227215431341
79.1183
astatham-gatkSNP*map_l150_m2_e1*
91.4615
84.4862
99.6922
80.1245
272134997272078440
47.6190
egarrison-hhgaINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
86.8726
86.3602
87.3912
57.0498
2712442842720439253577
91.1338