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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28851-28900 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.0099 | 99.5025 | 98.5222 | 88.5634 | 200 | 1 | 200 | 3 | 2 | 66.6667 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.2556 | 99.5025 | 99.0099 | 88.8950 | 200 | 1 | 200 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 91.5332 | 92.5926 | 90.4977 | 62.7319 | 200 | 16 | 200 | 21 | 15 | 71.4286 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m0_e0 | homalt | 97.0874 | 96.1538 | 98.0392 | 75.1523 | 200 | 8 | 200 | 4 | 2 | 50.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.0428 | 98.5294 | 97.5610 | 92.5617 | 201 | 3 | 200 | 5 | 3 | 60.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 40.5092 | 55.2023 | 31.9936 | 87.5351 | 191 | 155 | 199 | 423 | 4 | 0.9456 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 1.5317 | 0.7843 | 32.5163 | 68.9024 | 12 | 1518 | 199 | 413 | 192 | 46.4891 | |
| gduggal-snapvard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 1.5317 | 0.7843 | 32.5163 | 68.9024 | 12 | 1518 | 199 | 413 | 192 | 46.4891 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.3680 | 95.2153 | 97.5490 | 76.7123 | 199 | 10 | 199 | 5 | 5 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.0050 | 99.5000 | 98.5149 | 61.3027 | 199 | 1 | 199 | 3 | 3 | 100.0000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.7593 | 99.0050 | 98.5149 | 88.5292 | 199 | 2 | 199 | 3 | 2 | 66.6667 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.7593 | 99.5000 | 98.0296 | 60.1179 | 199 | 1 | 199 | 4 | 4 | 100.0000 | |
| jpowers-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 33.1178 | 59.0909 | 23.0058 | 50.3159 | 195 | 135 | 199 | 666 | 661 | 99.2492 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.9949 | 98.9848 | 99.0050 | 58.8957 | 195 | 2 | 199 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.5149 | 99.5000 | 97.5490 | 60.7692 | 199 | 1 | 199 | 5 | 5 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.2716 | 99.5000 | 97.0732 | 61.0266 | 199 | 1 | 199 | 6 | 6 | 100.0000 | |
| jlack-gatk | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.5149 | 99.0050 | 98.0296 | 88.4725 | 199 | 2 | 199 | 4 | 2 | 50.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l150_m0_e0 | het | 86.3303 | 98.0198 | 77.1318 | 93.8278 | 198 | 4 | 199 | 59 | 1 | 1.6949 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.0050 | 99.5000 | 98.5149 | 62.6617 | 199 | 1 | 199 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.2519 | 99.5000 | 99.0050 | 61.8596 | 199 | 1 | 199 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.7593 | 99.5000 | 98.0296 | 59.8814 | 199 | 1 | 199 | 4 | 4 | 100.0000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.7740 | 98.0000 | 97.5490 | 59.2814 | 196 | 4 | 199 | 5 | 2 | 40.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.8393 | 94.3128 | 83.9662 | 66.8067 | 199 | 12 | 199 | 38 | 33 | 86.8421 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 91.7051 | 92.1296 | 91.2844 | 63.1134 | 199 | 17 | 199 | 19 | 15 | 78.9474 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e0 | het | 93.8679 | 94.7619 | 92.9907 | 95.2339 | 199 | 11 | 199 | 15 | 1 | 6.6667 | |
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 63.5783 | 86.5217 | 50.2525 | 62.0690 | 199 | 31 | 199 | 197 | 181 | 91.8782 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.5149 | 99.5000 | 97.5490 | 60.8445 | 199 | 1 | 199 | 5 | 5 | 100.0000 | |
| ckim-dragen | INDEL | * | map_l250_m2_e1 | het | 92.7858 | 94.7867 | 90.8676 | 96.7304 | 200 | 11 | 199 | 20 | 2 | 10.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e0 | homalt | 98.5149 | 99.0050 | 98.0296 | 89.2819 | 199 | 2 | 199 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | INDEL | * | func_cds | het | 93.8679 | 92.9907 | 94.7619 | 36.5559 | 199 | 15 | 199 | 11 | 9 | 81.8182 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.5149 | 99.5000 | 97.5490 | 61.2167 | 199 | 1 | 199 | 5 | 5 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 91.0387 | 84.9785 | 98.0296 | 74.3687 | 198 | 35 | 199 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l150_m0_e0 | het | 97.0684 | 98.0198 | 96.1353 | 92.6648 | 198 | 4 | 199 | 8 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.5149 | 99.5000 | 97.5490 | 60.8445 | 199 | 1 | 199 | 5 | 5 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m1_e0 | homalt | 72.4954 | 57.0201 | 99.5000 | 79.8184 | 199 | 150 | 199 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 81.7248 | 70.3180 | 97.5490 | 56.0345 | 199 | 84 | 199 | 5 | 5 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 87.6652 | 82.2314 | 93.8679 | 58.9147 | 199 | 43 | 199 | 13 | 3 | 23.0769 | |
| ckim-isaac | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 68.0000 | 51.5152 | 100.0000 | 41.2979 | 187 | 176 | 199 | 0 | 0 | ||
| ckim-isaac | SNP | ti | map_l250_m0_e0 | homalt | 62.5786 | 45.6422 | 99.5000 | 87.4451 | 199 | 237 | 199 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 93.1476 | 87.5576 | 99.5000 | 42.6934 | 190 | 27 | 199 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m0_e0 | het | 97.3057 | 98.0198 | 96.6019 | 89.7051 | 198 | 4 | 199 | 7 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.2716 | 99.5000 | 97.0732 | 60.1167 | 199 | 1 | 199 | 6 | 6 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e0 | het | 95.9036 | 94.7619 | 97.0732 | 95.8061 | 199 | 11 | 199 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m0_e0 | het | 85.0446 | 99.0099 | 74.5318 | 93.3133 | 200 | 2 | 199 | 68 | 6 | 8.8235 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 71.7070 | 89.4928 | 59.8187 | 91.4779 | 247 | 29 | 198 | 133 | 8 | 6.0150 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e1 | hetalt | 99.7481 | 100.0000 | 99.4975 | 71.0756 | 30 | 0 | 198 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m1_e0 | homalt | 72.3949 | 56.7335 | 100.0000 | 90.7216 | 198 | 151 | 198 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m1_e0 | homalt | 99.2481 | 100.0000 | 98.5075 | 86.5010 | 198 | 0 | 198 | 3 | 2 | 66.6667 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.1165 | 94.7368 | 97.5369 | 77.2676 | 198 | 11 | 198 | 5 | 5 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.2630 | 99.0000 | 97.5369 | 60.9615 | 198 | 2 | 198 | 5 | 5 | 100.0000 | |