PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
28601-28650 / 86044 show all | |||||||||||||||
| mlin-fermikit | INDEL | * | func_cds | het | 98.1221 | 97.6636 | 98.5849 | 37.4631 | 209 | 5 | 209 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 95.6731 | 91.7051 | 100.0000 | 37.4251 | 199 | 18 | 209 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.6957 | 91.9028 | 97.6636 | 79.0402 | 227 | 20 | 209 | 5 | 3 | 60.0000 | |
| hfeng-pmm3 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 95.8716 | 99.0521 | 92.8889 | 67.6259 | 209 | 2 | 209 | 16 | 15 | 93.7500 | |
| hfeng-pmm3 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.8124 | 100.0000 | 97.6526 | 78.1089 | 208 | 0 | 208 | 5 | 3 | 60.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 79.0099 | 208 | 0 | 208 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.9772 | 98.5782 | 91.6300 | 69.1156 | 208 | 3 | 208 | 19 | 18 | 94.7368 | |
| hfeng-pmm1 | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.8124 | 100.0000 | 97.6526 | 79.2398 | 208 | 0 | 208 | 5 | 3 | 60.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m0_e0 | * | 79.8464 | 67.0968 | 98.5782 | 90.1356 | 208 | 102 | 208 | 3 | 0 | 0.0000 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.2840 | 98.5782 | 100.0000 | 47.3418 | 208 | 3 | 208 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.2840 | 100.0000 | 98.5782 | 81.2278 | 208 | 0 | 208 | 3 | 2 | 66.6667 | |
| cchapple-custom | INDEL | * | map_l250_m2_e0 | het | 91.3070 | 94.2857 | 88.5106 | 96.0027 | 198 | 12 | 208 | 27 | 2 | 7.4074 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 81.1556 | 208 | 0 | 208 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.8778 | 94.5946 | 97.1963 | 63.5434 | 210 | 12 | 208 | 6 | 5 | 83.3333 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.3617 | 97.6852 | 99.0476 | 60.3025 | 211 | 5 | 208 | 2 | 1 | 50.0000 | |
| jli-custom | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 79.0514 | 208 | 0 | 208 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 94.9153 | 90.3226 | 100.0000 | 36.0000 | 196 | 21 | 208 | 0 | 0 | ||
| jmaeng-gatk | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 80.5147 | 208 | 0 | 208 | 4 | 3 | 75.0000 | |
| anovak-vg | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 68.6189 | 80.5430 | 59.7701 | 87.2900 | 178 | 43 | 208 | 140 | 52 | 37.1429 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.2949 | 87.8641 | 97.1963 | 87.9301 | 181 | 25 | 208 | 6 | 3 | 50.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.2840 | 98.5782 | 100.0000 | 47.6071 | 208 | 3 | 208 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 80.6038 | 208 | 0 | 208 | 4 | 3 | 75.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 80.2054 | 208 | 0 | 208 | 4 | 3 | 75.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e0 | homalt | 84.2469 | 73.5537 | 98.5782 | 91.9064 | 178 | 64 | 208 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m0_e0 | homalt | 99.0476 | 100.0000 | 98.1132 | 81.8648 | 208 | 0 | 208 | 4 | 2 | 50.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 75.8922 | 93.2127 | 64.0000 | 92.1573 | 206 | 15 | 208 | 117 | 11 | 9.4017 | |
| gduggal-bwaplat | INDEL | D6_15 | map_siren | het | 83.3667 | 74.2857 | 94.9772 | 93.5455 | 208 | 72 | 208 | 11 | 3 | 27.2727 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | HG002complexvar | hetalt | 90.0287 | 86.6397 | 93.6937 | 56.8932 | 214 | 33 | 208 | 14 | 14 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.1242 | 97.2222 | 99.0431 | 59.4175 | 210 | 6 | 207 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | SNP | ti | HG002complexvar | hetalt | 99.0419 | 99.5169 | 98.5714 | 37.5000 | 206 | 1 | 207 | 3 | 3 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.8067 | 99.5192 | 98.1043 | 79.8279 | 207 | 1 | 207 | 4 | 2 | 50.0000 | |
| qzeng-custom | INDEL | * | func_cds | het | 93.8897 | 98.1308 | 90.0000 | 52.8689 | 210 | 4 | 207 | 23 | 2 | 8.6957 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.0431 | 98.1043 | 100.0000 | 47.8589 | 207 | 4 | 207 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 62.6589 | 45.8248 | 99.0431 | 30.1003 | 225 | 266 | 207 | 2 | 1 | 50.0000 | |
| anovak-vg | INDEL | * | func_cds | homalt | 87.7119 | 91.5929 | 84.1463 | 33.8710 | 207 | 19 | 207 | 39 | 35 | 89.7436 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 21.2269 | 13.6601 | 47.5862 | 87.4784 | 209 | 1321 | 207 | 228 | 185 | 81.1404 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 21.2269 | 13.6601 | 47.5862 | 87.4784 | 209 | 1321 | 207 | 228 | 185 | 81.1404 | |
| ciseli-custom | INDEL | I1_5 | map_l150_m2_e1 | het | 63.3474 | 64.9842 | 61.7910 | 92.1527 | 206 | 111 | 207 | 128 | 110 | 85.9375 | |
| hfeng-pmm1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 94.7368 | 98.1043 | 91.5929 | 67.5287 | 207 | 4 | 207 | 19 | 18 | 94.7368 | |
| jlack-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 94.9153 | 90.3226 | 100.0000 | 39.1176 | 196 | 21 | 207 | 0 | 0 | ||
| jlack-gatk | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.8067 | 99.5192 | 98.1043 | 80.8182 | 207 | 1 | 207 | 4 | 2 | 50.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.1996 | 94.1441 | 96.2791 | 59.2803 | 209 | 13 | 207 | 8 | 6 | 75.0000 | |
| egarrison-hhga | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 89.9659 | 85.8300 | 94.5205 | 76.9716 | 212 | 35 | 207 | 12 | 8 | 66.6667 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m0_e0 | homalt | 98.8067 | 99.5192 | 98.1043 | 81.0762 | 207 | 1 | 207 | 4 | 3 | 75.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.4191 | 94.1441 | 96.7290 | 64.9180 | 209 | 13 | 207 | 7 | 5 | 71.4286 | |
| ltrigg-rtg1 | SNP | ti | HG002complexvar | hetalt | 99.0419 | 99.5169 | 98.5714 | 36.3636 | 206 | 1 | 207 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.3553 | 92.3423 | 98.5714 | 56.3410 | 205 | 17 | 207 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | * | func_cds | homalt | 95.3917 | 91.5929 | 99.5192 | 34.3849 | 207 | 19 | 207 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 54.9072 | 42.2449 | 78.4091 | 85.8369 | 207 | 283 | 207 | 57 | 28 | 49.1228 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 49.3293 | 79.5367 | 35.7513 | 30.4087 | 206 | 53 | 207 | 372 | 357 | 95.9677 | |