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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
2801-2850 / 86044 show all
raldana-dualsentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3694
98.9198
99.8231
52.8249
2765730227656499
18.3673
cchapple-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3227
99.7146
98.9339
60.9851
27599792765529824
8.0537
ndellapenna-hhgaSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2284
98.8877
99.5715
51.9423
276483112765511975
63.0252
cchapple-customSNP*map_l125_m1_e0het
96.0557
97.2739
94.8677
77.0814
27618774276531496342
22.8610
rpoplin-dv42SNP*map_l100_m2_e1homalt
99.6343
99.4783
99.7907
63.6404
27651145276525854
93.1034
hfeng-pmm1SNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4265
98.9020
99.9566
52.6521
2765230727651123
25.0000
ckim-isaacSNP*map_l125_m2_e1*
73.7959
58.5590
99.7510
72.8548
2764119561276436917
24.6377
ckim-dragenSNP*map_l100_m2_e1homalt
99.6376
99.4100
99.8663
58.3837
27632164276373733
89.1892
hfeng-pmm2SNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3761
98.8412
99.9168
52.9178
2763532427634233
13.0435
dgrover-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5765
99.8591
99.2956
64.7620
27639392762919619
9.6939
bgallagher-sentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4994
99.8555
99.1459
64.4153
27638402762823820
8.4034
hfeng-pmm2INDEL*HG002compoundhet*
94.6829
92.5968
96.8651
60.5702
27742221827624894877
98.0984
rpoplin-dv42SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.8590
99.8446
99.8734
64.1005
2763543276223519
54.2857
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
85.3685
84.7087
86.0387
70.3107
2710048922762144824002
89.2905
hfeng-pmm1INDEL*HG002compoundhet*
94.8334
92.5834
97.1953
59.6665
27738222227620797774
97.1142
jlack-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9413
99.8121
98.0856
65.0500
27626522761653926
4.8238
ltrigg-rtg2SNP*map_l125_m1_e0het
98.5086
97.2457
99.8048
55.1586
2761078227610546
11.1111
gduggal-bwafbSNP*map_l100_m2_e1homalt
99.5977
99.3200
99.8770
64.6290
27607189276073420
58.8235
astatham-gatkSNP*map_l100_m2_e1homalt
99.6157
99.3200
99.9131
60.3111
27607189276072419
79.1667
jli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4506
99.7507
99.1523
64.1117
27609692760423618
7.6271
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
87.9422
91.6371
84.5336
63.1509
2793125492759650494851
96.0784
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
87.9422
91.6371
84.5336
63.1509
2793125492759650494851
96.0784
anovak-vgSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.4923
97.2577
95.7388
64.3143
26919759275901228588
47.8827
ckim-isaacINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
98.5480
97.7849
99.3232
55.6830
276346262758918894
50.0000
ckim-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5094
99.6893
99.3302
65.3964
27592862758218618
9.6774
gduggal-snapfbSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
89.1402
99.2630
80.8911
72.6164
27474204275796515214
3.2847
jmaeng-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5829
99.6423
99.5235
65.6204
27579992756913213
9.8485
ltrigg-rtg1SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5720
99.5845
99.5594
59.6473
275631152756812211
9.0164
gduggal-bwafbSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.8735
99.4653
98.2886
67.7942
275301482756848097
20.2083
ltrigg-rtg1INDEL*HG002compoundhet*
95.1229
91.7957
98.7003
59.4533
27502245827566363303
83.4711
hfeng-pmm3INDEL*HG002compoundhet*
94.8142
92.3999
97.3580
58.7757
27683227727564748724
96.7914
ltrigg-rtg2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4910
99.5737
99.4084
59.3516
275601182755916414
8.5366
jmaeng-gatkINDEL*HG002compoundhet*
93.6190
92.3632
94.9094
62.9257
2767222882755614781464
99.0528
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
94.3271
95.6499
93.0405
79.9739
274631249275532061214
10.3833
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.3271
95.6499
93.0405
79.9739
274631249275532061214
10.3833
gduggal-snapplatSNP*map_l150_m1_e0*
92.5221
89.9049
95.2961
83.9996
275193090275321359751
55.2612
jpowers-varprowlSNP*map_l100_m2_e1homalt
99.3431
99.0286
99.6597
66.2636
27526270275269469
73.4043
ghariani-varprowlSNP*map_l100_m2_e1homalt
99.3161
99.0071
99.6271
64.4501
275202762752010368
66.0194
ckim-vqsrSNP*segdup*
98.8099
98.0689
99.5622
93.7251
275255422751912112
9.9174
qzeng-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.9643
99.4833
98.4507
67.9503
275351432751543339
9.0069
qzeng-customSNP*segdup*
98.6778
98.8634
98.4928
92.2719
277483192751242168
16.1520
gduggal-bwaplatSNP*segdup*
98.6033
97.9585
99.2566
93.9219
274945732750520620
9.7087
ciseli-customSNP*segdup*
96.6280
98.6033
94.7303
91.0474
27675392275041530201
13.1373
ghariani-varprowlSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
95.6349
98.9595
92.5264
70.1656
27390288274972221284
12.7870
ckim-vqsrSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3676
99.3641
99.3711
65.4796
275021762749217418
10.3448
egarrison-hhgaSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5328
99.2846
99.7822
62.2610
27480198274916036
60.0000
jlack-gatkSNP*map_l100_m2_e1homalt
99.3962
98.8991
99.8982
60.9989
27490306274902822
78.5714
hfeng-pmm2SNP*map_l100_m2_e0homalt
99.8674
99.8728
99.8619
63.3992
2748835274883819
50.0000
hfeng-pmm1SNP*map_l100_m2_e0homalt
99.8583
99.8438
99.8728
63.3749
2748043274803517
48.5714
hfeng-pmm3SNP*map_l100_m2_e0homalt
99.8546
99.8365
99.8728
63.2901
2747845274783517
48.5714