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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 51 52 53 54 55 56 57 58 59 ... 1720 1721 » 2701-2750 / 86044 show all
hfeng-pmm1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.7336	97.7570	99.7300	68.1488	28068	644	28068	76	5	6.5790
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.6790	99.4763	99.8825	56.1108	28112	148	28064	33	18	54.5455
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.4907	97.7292	99.2642	69.7423	28060	652	28060	208	16	7.6923
raldana-dualsentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.4907	97.7292	99.2642	69.7423	28060	652	28060	208	16	7.6923
jli-custom	SNP	*	map_l125_m1_e0	het	99.0623	98.7919	99.3341	68.8001	28049	343	28046	188	54	28.7234
gduggal-bwaplat	INDEL	D1_5	HG002complexvar	*	91.7545	85.9392	98.4139	61.1958	28115	4600	28045	452	321	71.0177
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.5017	97.6560	99.3622	69.3191	28039	673	28040	180	4	2.2222
hfeng-pmm2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.5017	97.6560	99.3622	69.3191	28039	673	28040	180	4	2.2222
ndellapenna-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4308	99.2074	99.6552	61.9169	28036	224	28038	97	74	76.2887
egarrison-hhga	SNP	*	map_l125_m1_e0	het	99.2263	98.7039	99.7544	69.9636	28024	368	28024	69	28	40.5797
gduggal-bwafb	SNP	*	map_l125_m1_e0	het	98.4352	98.7039	98.1679	74.4388	28024	368	28024	523	121	23.1358
jli-custom	SNP	*	segdup	*	99.5966	99.8397	99.3547	89.2512	28022	45	28022	182	12	6.5934
ckim-dragen	SNP	*	segdup	*	98.4991	99.8219	97.2109	92.1838	28017	50	28022	804	14	1.7413
bgallagher-sentieon	SNP	*	segdup	*	99.5028	99.8432	99.1647	90.1877	28023	44	28017	236	12	5.0848
dgrover-gatk	SNP	*	segdup	*	99.6727	99.8397	99.5063	90.5121	28022	45	28016	139	12	8.6331
hfeng-pmm3	SNP	*	segdup	*	99.7170	99.8183	99.6159	89.5042	28016	51	28010	108	8	7.4074
hfeng-pmm2	SNP	*	segdup	*	99.6762	99.8147	99.5380	90.2632	28015	52	28009	130	13	10.0000
jlack-gatk	SNP	*	segdup	*	98.2374	99.8040	96.7192	93.4608	28012	55	28006	950	16	1.6842
hfeng-pmm1	SNP	*	segdup	*	99.7400	99.7934	99.6867	89.3409	28009	58	28003	88	11	12.5000
raldana-dualsentieon	SNP	*	segdup	*	99.5928	99.7934	99.3931	89.8391	28009	58	28003	171	10	5.8480
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5721	99.2498	99.8965	56.0085	28048	212	27998	29	16	55.1724
jpowers-varprowl	SNP	tv	map_siren	het	97.6371	97.8538	97.4214	66.9739	27995	614	27995	741	114	15.3846
eyeh-varpipe	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	*	87.2098	85.2583	89.2527	52.9223	16934	2928	27995	3371	3181	94.3637
rpoplin-dv42	SNP	*	segdup	*	99.7488	99.7506	99.7470	89.9398	27997	70	27991	71	31	43.6620
cchapple-custom	SNP	*	segdup	*	99.5856	99.8219	99.3504	91.8828	28017	50	27988	183	25	13.6612
gduggal-bwafb	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2808	98.8889	99.6759	57.1851	27946	314	27984	91	76	83.5165
gduggal-snapplat	SNP	ti	map_l125_m2_e0	*	94.3195	92.4218	96.2968	81.1125	27965	2293	27980	1076	588	54.6468
ltrigg-rtg2	SNP	*	segdup	*	99.1371	99.6722	98.6078	87.3153	27975	92	27977	395	53	13.4177
egarrison-hhga	SNP	*	segdup	*	99.6030	99.6793	99.5269	89.4388	27977	90	27977	133	40	30.0752
ghariani-varprowl	SNP	*	segdup	*	97.8779	99.6437	96.1737	92.2561	27967	100	27975	1113	70	6.2893
gduggal-snapvard	SNP	ti	map_l125_m1_e0	*	93.7547	96.2264	91.4068	77.7724	28228	1107	27965	2629	225	8.5584
ltrigg-rtg1	SNP	*	segdup	*	99.0787	99.6188	98.5445	88.0967	27960	107	27963	413	51	12.3487
ckim-dragen	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.7964	99.8426	99.7503	54.7629	27915	44	27963	70	23	32.8571
ndellapenna-hhga	SNP	*	segdup	*	99.5371	99.5903	99.4839	89.2221	27952	115	27952	145	51	35.1724
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.5109	97.3461	99.7039	72.1148	27950	762	27950	83	24	28.9157
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.5109	97.3461	99.7039	72.1148	27950	762	27950	83	24	28.9157
gduggal-snapfb	SNP	*	segdup	*	98.9601	99.4941	98.4319	91.5712	27925	142	27933	445	34	7.6405
bgallagher-sentieon	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.7144	99.8963	99.5331	54.5778	27930	29	27929	131	10	7.6336
dgrover-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.7696	99.8855	99.6539	55.1919	27927	32	27926	97	8	8.2474
jli-custom	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.7232	99.8605	99.5863	54.2148	27920	39	27921	116	9	7.7586
gduggal-bwafb	SNP	*	segdup	*	98.9280	99.4656	98.3963	91.8876	27917	150	27917	455	30	6.5934
rpoplin-dv42	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.8658	99.8462	99.8855	53.8968	27916	43	27913	32	19	59.3750
gduggal-snapfb	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	87.6693	98.8054	78.7892	66.3228	27625	334	27904	7512	326	4.3397
cchapple-custom	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.6177	99.6495	99.5860	52.1198	27861	98	27903	116	33	28.4483
qzeng-custom	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.0978	99.2811	98.9152	61.5160	27758	201	27902	306	67	21.8954
ltrigg-rtg1	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5464	99.5815	99.5114	49.8381	27842	117	27901	137	8	5.8394
bgallagher-sentieon	INDEL	*	HG002compoundhet	*	93.7345	93.5147	93.9554	62.6967	28017	1943	27901	1795	1783	99.3315
asubramanian-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	97.4185	97.0953	97.7438	76.1583	27878	834	27900	644	34	5.2795
asubramanian-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	97.4185	97.0953	97.7438	76.1583	27878	834	27900	644	34	5.2795
jlack-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4351	99.7890	99.0837	56.5880	27900	59	27899	258	21	8.1395

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