PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
27401-27450 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.3110 | 89.7106 | 97.2125 | 69.4681 | 279 | 32 | 279 | 8 | 8 | 100.0000 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.8473 | 92.4490 | 67.2289 | 80.6707 | 453 | 37 | 279 | 136 | 131 | 96.3235 | |
| astatham-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 95.3587 | 92.6421 | 98.2394 | 90.9091 | 277 | 22 | 279 | 5 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.7538 | 63.8444 | 96.2069 | 68.5125 | 279 | 158 | 279 | 11 | 11 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l150_m2_e1 | * | 68.8039 | 52.5424 | 99.6429 | 96.3688 | 279 | 252 | 279 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 73.9073 | 59.4883 | 97.5524 | 91.9640 | 279 | 190 | 279 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m1_e0 | het | 95.1960 | 92.6421 | 97.8947 | 88.6091 | 277 | 22 | 279 | 6 | 1 | 16.6667 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.6095 | 92.7536 | 79.4872 | 92.6630 | 256 | 20 | 279 | 72 | 9 | 12.5000 | |
| raldana-dualsentieon | INDEL | * | map_l125_m0_e0 | homalt | 98.0600 | 97.8873 | 98.2332 | 86.1002 | 278 | 6 | 278 | 5 | 3 | 60.0000 | |
| mlin-fermikit | INDEL | D16_PLUS | HG002complexvar | homalt | 84.2050 | 94.4637 | 75.9563 | 78.1493 | 273 | 16 | 278 | 88 | 85 | 96.5909 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 85.5068 | 76.3231 | 97.2028 | 39.0192 | 274 | 85 | 278 | 8 | 8 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | map_l250_m1_e0 | * | 94.3636 | 90.4918 | 98.5816 | 93.0781 | 276 | 29 | 278 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 98.9324 | 96.5458 | 0 | 0 | 278 | 3 | 1 | 33.3333 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.8621 | 98.2332 | 93.6027 | 69.8477 | 278 | 5 | 278 | 19 | 19 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.5326 | 98.2332 | 92.9766 | 69.7368 | 278 | 5 | 278 | 21 | 21 | 100.0000 | |
| dgrover-gatk | INDEL | * | map_l125_m0_e0 | homalt | 97.8873 | 97.8873 | 97.8873 | 88.7703 | 278 | 6 | 278 | 6 | 4 | 66.6667 | |
| jlack-gatk | INDEL | D16_PLUS | HG002compoundhet | het | 80.6922 | 97.5309 | 68.8119 | 59.1507 | 395 | 10 | 278 | 126 | 121 | 96.0317 | |
| gduggal-bwafb | INDEL | D1_5 | HG002compoundhet | homalt | 46.3350 | 95.8763 | 30.5495 | 82.2716 | 279 | 12 | 278 | 632 | 615 | 97.3101 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 58.9695 | 42.1941 | 97.8873 | 36.0360 | 100 | 137 | 278 | 6 | 6 | 100.0000 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6971 | 98.2332 | 93.2886 | 69.7769 | 278 | 5 | 278 | 20 | 20 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 95.8571 | 92.6573 | 99.2857 | 55.6260 | 265 | 21 | 278 | 2 | 2 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.5326 | 98.2332 | 92.9766 | 69.5519 | 278 | 5 | 278 | 21 | 21 | 100.0000 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.3688 | 98.2332 | 92.6667 | 69.5122 | 278 | 5 | 278 | 22 | 22 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 77.5406 | 92.6531 | 66.6667 | 80.5140 | 454 | 36 | 278 | 139 | 134 | 96.4029 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.5763 | 99.1561 | 100.0000 | 22.9917 | 235 | 2 | 278 | 0 | 0 | ||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 69.0773 | 96.1442 | 0 | 1 | 277 | 124 | 70 | 56.4516 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 69.0773 | 96.1442 | 0 | 1 | 277 | 124 | 70 | 56.4516 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l150_m1_e0 | het | 96.5664 | 94.3144 | 98.9286 | 82.5218 | 282 | 17 | 277 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m0_e0 | * | 96.5157 | 95.8478 | 97.1930 | 90.6741 | 277 | 12 | 277 | 8 | 3 | 37.5000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m0_e0 | * | 88.6400 | 95.8478 | 82.4405 | 93.2094 | 277 | 12 | 277 | 59 | 6 | 10.1695 | |
| raldana-dualsentieon | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6822 | 97.8799 | 93.5811 | 68.4771 | 277 | 6 | 277 | 19 | 19 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l150_m2_e0 | het | 95.1038 | 91.2621 | 99.2832 | 83.3631 | 282 | 27 | 277 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m0_e0 | homalt | 98.5803 | 97.8873 | 99.2832 | 81.1995 | 278 | 6 | 277 | 2 | 1 | 50.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | * | hetalt | 99.4614 | 100.0000 | 98.9286 | 95.9296 | 1 | 0 | 277 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 99.6403 | 90.3972 | 0 | 0 | 277 | 1 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.5172 | 97.8799 | 93.2660 | 69.8477 | 277 | 6 | 277 | 20 | 20 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m1_e0 | het | 93.5679 | 92.3077 | 94.8630 | 91.0374 | 276 | 23 | 277 | 15 | 2 | 13.3333 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 95.8559 | 92.6573 | 99.2832 | 57.2741 | 265 | 21 | 277 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.5157 | 97.8799 | 95.1890 | 68.7433 | 277 | 6 | 277 | 14 | 14 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 75.4333 | 60.8225 | 99.2832 | 50.1786 | 281 | 181 | 277 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m0_e0 | * | 87.6716 | 96.8858 | 80.0578 | 92.5399 | 280 | 9 | 277 | 69 | 7 | 10.1449 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 64.5688 | 48.5114 | 96.5157 | 77.0400 | 277 | 294 | 277 | 10 | 5 | 50.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e1 | hetalt | 99.8192 | 100.0000 | 99.6390 | 65.8025 | 31 | 0 | 276 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | I16_PLUS | HG002complexvar | homalt | 89.7501 | 87.0550 | 92.6174 | 71.3186 | 269 | 40 | 276 | 22 | 21 | 95.4545 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 75.5641 | 66.4251 | 87.6190 | 72.9614 | 275 | 139 | 276 | 39 | 39 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m0_e0 | * | 92.4426 | 88.7097 | 96.5035 | 91.8681 | 275 | 35 | 276 | 10 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_siren | * | 94.0200 | 90.1639 | 98.2206 | 86.0753 | 275 | 30 | 276 | 5 | 3 | 60.0000 | |
| asubramanian-gatk | INDEL | D16_PLUS | HG002compoundhet | het | 87.8383 | 97.0370 | 80.2326 | 59.6717 | 393 | 12 | 276 | 68 | 64 | 94.1176 | |
| ckim-isaac | SNP | * | map_l250_m0_e0 | homalt | 60.9272 | 43.8792 | 99.6390 | 88.3516 | 276 | 353 | 276 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | I1_5 | HG002compoundhet | homalt | 46.8802 | 63.5258 | 37.1467 | 83.7347 | 209 | 120 | 276 | 467 | 330 | 70.6638 | |