PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2651-2700 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | tv | map_siren | het | 99.1688 | 98.8255 | 99.5144 | 50.4058 | 28273 | 336 | 28278 | 138 | 6 | 4.3478 | |
| gduggal-bwaplat | SNP | * | map_l125_m2_e0 | * | 75.1671 | 60.4306 | 99.4087 | 87.7400 | 28235 | 18488 | 28242 | 168 | 47 | 27.9762 | |
| ltrigg-rtg2 | SNP | tv | map_siren | het | 99.1276 | 98.6962 | 99.5628 | 47.7162 | 28236 | 373 | 28241 | 124 | 4 | 3.2258 | |
| ckim-isaac | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.3986 | 91.8696 | 99.2095 | 63.6282 | 28260 | 2501 | 28237 | 225 | 152 | 67.5556 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.9374 | 98.0844 | 95.8169 | 84.1185 | 28162 | 550 | 28220 | 1232 | 90 | 7.3052 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 96.9374 | 98.0844 | 95.8169 | 84.1185 | 28162 | 550 | 28220 | 1232 | 90 | 7.3052 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8531 | 99.8195 | 99.8867 | 58.0732 | 28209 | 51 | 28212 | 32 | 20 | 62.5000 | |
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8478 | 99.8054 | 99.8902 | 58.2232 | 28205 | 55 | 28208 | 31 | 20 | 64.5161 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4435 | 99.1224 | 99.7666 | 66.9356 | 28012 | 248 | 28207 | 66 | 17 | 25.7576 | |
| bgallagher-sentieon | SNP | * | map_l125_m1_e0 | het | 98.9928 | 99.3695 | 98.6190 | 74.6006 | 28213 | 179 | 28207 | 395 | 55 | 13.9241 | |
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8088 | 99.7806 | 99.8371 | 58.7309 | 28198 | 62 | 28192 | 46 | 19 | 41.3043 | |
| hfeng-pmm3 | SNP | * | map_l125_m1_e0 | het | 99.4129 | 99.3132 | 99.5129 | 70.9946 | 28197 | 195 | 28191 | 138 | 13 | 9.4203 | |
| dgrover-gatk | SNP | * | map_l125_m1_e0 | het | 99.1524 | 99.3097 | 98.9956 | 76.1623 | 28196 | 196 | 28190 | 286 | 55 | 19.2308 | |
| ciseli-custom | INDEL | D1_5 | HG002complexvar | * | 84.6887 | 87.0694 | 82.4348 | 57.7103 | 28483 | 4230 | 28182 | 6005 | 2638 | 43.9301 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 86.9733 | 91.1887 | 83.1303 | 79.6742 | 28398 | 2744 | 28182 | 5719 | 224 | 3.9168 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 86.9733 | 91.1887 | 83.1303 | 79.6742 | 28398 | 2744 | 28182 | 5719 | 224 | 3.9168 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8087 | 99.7134 | 99.9043 | 58.1701 | 28179 | 81 | 28181 | 27 | 15 | 55.5556 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7099 | 99.7098 | 99.7099 | 59.0011 | 28178 | 82 | 28181 | 82 | 31 | 37.8049 | |
| hfeng-pmm2 | SNP | * | map_l125_m1_e0 | het | 99.0978 | 99.2392 | 98.9567 | 74.3753 | 28176 | 216 | 28170 | 297 | 25 | 8.4175 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5155 | 98.1227 | 98.9115 | 70.9579 | 28173 | 539 | 28169 | 310 | 55 | 17.7419 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5155 | 98.1227 | 98.9115 | 70.9579 | 28173 | 539 | 28169 | 310 | 55 | 17.7419 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7892 | 99.6568 | 99.9219 | 57.6377 | 28163 | 97 | 28165 | 22 | 14 | 63.6364 | |
| rpoplin-dv42 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7238 | 99.6461 | 99.8015 | 61.5050 | 28160 | 100 | 28162 | 56 | 44 | 78.5714 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7891 | 99.6426 | 99.9361 | 57.3259 | 28159 | 101 | 28161 | 18 | 11 | 61.1111 | |
| ckim-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7343 | 99.6285 | 99.8404 | 58.9273 | 28155 | 105 | 28158 | 45 | 20 | 44.4444 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7590 | 99.5966 | 99.9219 | 57.4394 | 28146 | 114 | 28148 | 22 | 15 | 68.1818 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7696 | 99.5895 | 99.9503 | 57.3476 | 28144 | 116 | 28146 | 14 | 7 | 50.0000 | |
| jli-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7466 | 99.5860 | 99.9077 | 57.3042 | 28143 | 117 | 28146 | 26 | 19 | 73.0769 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7095 | 99.5789 | 99.8404 | 58.9584 | 28141 | 119 | 28144 | 45 | 19 | 42.2222 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.7796 | 97.9625 | 99.6105 | 70.5385 | 28127 | 585 | 28128 | 110 | 10 | 9.0909 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.7796 | 97.9625 | 99.6105 | 70.5385 | 28127 | 585 | 28128 | 110 | 10 | 9.0909 | |
| ckim-vqsr | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6915 | 99.4869 | 99.8970 | 58.9754 | 28115 | 145 | 28118 | 29 | 17 | 58.6207 | |
| jlack-gatk | SNP | * | map_l125_m1_e0 | het | 94.3869 | 99.0455 | 90.1469 | 82.7150 | 28121 | 271 | 28115 | 3073 | 220 | 7.1591 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 92.6629 | 89.7351 | 95.7882 | 48.3290 | 28184 | 3224 | 28110 | 1236 | 977 | 79.0453 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 92.6629 | 89.7351 | 95.7882 | 48.3290 | 28184 | 3224 | 28110 | 1236 | 977 | 79.0453 | |
| jli-custom | INDEL | * | HG002compoundhet | * | 95.6209 | 94.1822 | 97.1042 | 61.3856 | 28217 | 1743 | 28100 | 838 | 804 | 95.9427 | |
| eyeh-varpipe | SNP | tv | map_siren | het | 95.7583 | 99.7903 | 92.0396 | 63.5402 | 28549 | 60 | 28096 | 2430 | 18 | 0.7407 | |
| ckim-dragen | SNP | * | map_l125_m1_e0 | het | 97.7148 | 98.9469 | 96.5131 | 76.8910 | 28093 | 299 | 28094 | 1015 | 88 | 8.6700 | |
| ghariani-varprowl | SNP | * | map_l125_m1_e0 | het | 97.3202 | 98.9398 | 95.7528 | 78.2919 | 28091 | 301 | 28091 | 1246 | 234 | 18.7801 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 86.7363 | 86.3984 | 87.0769 | 60.8804 | 27136 | 4272 | 28091 | 4169 | 1922 | 46.1022 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 86.7363 | 86.3984 | 87.0769 | 60.8804 | 27136 | 4272 | 28091 | 4169 | 1922 | 46.1022 | |
| qzeng-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.4780 | 96.5462 | 96.4099 | 50.7305 | 19176 | 686 | 28090 | 1046 | 443 | 42.3518 | |
| raldana-dualsentieon | SNP | * | map_l125_m1_e0 | het | 98.7746 | 98.9539 | 98.5959 | 72.5206 | 28095 | 297 | 28089 | 400 | 4 | 1.0000 | |
| rpoplin-dv42 | SNP | * | map_l125_m1_e0 | het | 99.0847 | 98.9539 | 99.2159 | 70.0178 | 28095 | 297 | 28089 | 222 | 128 | 57.6577 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 91.9958 | 97.3948 | 87.1640 | 83.7213 | 27964 | 748 | 28079 | 4135 | 89 | 2.1524 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 91.9958 | 97.3948 | 87.1640 | 83.7213 | 27964 | 748 | 28079 | 4135 | 89 | 2.1524 | |
| hfeng-pmm1 | SNP | * | map_l125_m1_e0 | het | 99.2507 | 98.9117 | 99.5921 | 70.2654 | 28083 | 309 | 28077 | 115 | 29 | 25.2174 | |
| gduggal-snapvard | SNP | * | map_l125_m2_e0 | het | 91.4436 | 96.8927 | 86.5748 | 82.3864 | 28407 | 911 | 28071 | 4353 | 308 | 7.0756 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4966 | 99.3171 | 99.6769 | 61.8156 | 28067 | 193 | 28070 | 91 | 68 | 74.7253 | |
| hfeng-pmm1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.7336 | 97.7570 | 99.7300 | 68.1488 | 28068 | 644 | 28068 | 76 | 5 | 6.5790 | |