PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
26301-26350 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.2779 | 97.9943 | 98.5632 | 89.1589 | 342 | 7 | 343 | 5 | 3 | 60.0000 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 85.6329 | 91.4439 | 80.5164 | 60.7373 | 342 | 32 | 343 | 83 | 58 | 69.8795 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 43.2336 | 78.7185 | 29.8002 | 45.0072 | 344 | 93 | 343 | 808 | 773 | 95.6683 | |
| ckim-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8544 | 100.0000 | 99.7093 | 57.2671 | 343 | 0 | 343 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.5646 | 100.0000 | 99.1329 | 58.6124 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| ciseli-custom | SNP | ti | map_l250_m0_e0 | homalt | 80.1652 | 78.8991 | 81.4727 | 91.7012 | 344 | 92 | 343 | 78 | 53 | 67.9487 | |
| ckim-vqsr | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8544 | 100.0000 | 99.7093 | 57.2671 | 343 | 0 | 343 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8544 | 100.0000 | 99.7093 | 57.0537 | 343 | 0 | 343 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8544 | 100.0000 | 99.7093 | 55.8974 | 343 | 0 | 343 | 1 | 0 | 0.0000 | |
| jli-custom | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5646 | 100.0000 | 99.1329 | 83.5317 | 343 | 0 | 343 | 3 | 2 | 66.6667 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 78.3552 | 66.6667 | 95.0139 | 97.4690 | 2 | 1 | 343 | 18 | 1 | 5.5556 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.8473 | 98.2808 | 99.4203 | 85.4859 | 343 | 6 | 343 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7093 | 100.0000 | 99.4203 | 57.5646 | 343 | 0 | 343 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 95.4063 | 91.4601 | 99.7085 | 54.4489 | 332 | 31 | 342 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 93.5263 | 90.1554 | 97.1591 | 89.2157 | 348 | 38 | 342 | 10 | 1 | 10.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.1304 | 99.7085 | 98.5591 | 85.6966 | 342 | 1 | 342 | 5 | 1 | 20.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | map_l125_m0_e0 | het | 98.2742 | 98.8406 | 97.7143 | 86.4341 | 341 | 4 | 342 | 8 | 1 | 12.5000 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l125_m0_e0 | het | 97.0197 | 98.8406 | 95.2646 | 88.9606 | 341 | 4 | 342 | 17 | 1 | 5.8824 | |
| rpoplin-dv42 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 93.4570 | 88.8571 | 98.5591 | 32.4903 | 311 | 39 | 342 | 5 | 5 | 100.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.4186 | 98.8439 | 100.0000 | 78.2581 | 342 | 4 | 342 | 0 | 0 | ||
| anovak-vg | INDEL | I1_5 | map_l150_m2_e0 | * | 60.2392 | 62.8131 | 57.8680 | 90.6723 | 326 | 193 | 342 | 249 | 156 | 62.6506 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l125_m0_e0 | het | 97.4343 | 98.8406 | 96.0674 | 89.1958 | 341 | 4 | 342 | 14 | 1 | 7.1429 | |
| ckim-isaac | SNP | tv | map_l250_m2_e1 | homalt | 53.1056 | 36.1522 | 100.0000 | 87.3614 | 342 | 604 | 342 | 0 | 0 | ||
| ckim-vqsr | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.5633 | 99.7085 | 99.4186 | 85.2740 | 342 | 1 | 342 | 2 | 1 | 50.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.4186 | 99.7085 | 99.1304 | 84.9608 | 342 | 1 | 342 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 25.8158 | 15.0294 | 91.4439 | 71.5156 | 332 | 1877 | 342 | 32 | 20 | 62.5000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 63.0372 | 53.0172 | 77.7273 | 49.0151 | 246 | 218 | 342 | 98 | 96 | 97.9592 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | homalt | 87.4375 | 78.5714 | 98.5591 | 89.4013 | 286 | 78 | 342 | 5 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | map_siren | * | 67.5902 | 64.0472 | 71.5481 | 80.9182 | 326 | 183 | 342 | 136 | 91 | 66.9118 | |
| ciseli-custom | INDEL | I1_5 | map_l125_m2_e1 | het | 64.8655 | 67.1260 | 62.7523 | 89.2822 | 341 | 167 | 342 | 203 | 175 | 86.2069 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8553 | 99.7110 | 100.0000 | 75.3957 | 345 | 1 | 342 | 0 | 0 | ||
| ckim-gatk | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.4186 | 99.7085 | 99.1304 | 85.2375 | 342 | 1 | 342 | 3 | 2 | 66.6667 | |
| ckim-dragen | INDEL | I16_PLUS | HG002complexvar | hetalt | 97.5535 | 95.2239 | 100.0000 | 69.2169 | 319 | 16 | 342 | 0 | 0 | ||
| ckim-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 93.3136 | 98.8406 | 88.3721 | 92.6760 | 341 | 4 | 342 | 45 | 1 | 2.2222 | |
| ciseli-custom | INDEL | D1_5 | segdup | homalt | 89.2779 | 95.5432 | 83.7838 | 94.1865 | 343 | 16 | 341 | 66 | 59 | 89.3939 | |
| ckim-dragen | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.7005 | 97.9943 | 99.4169 | 85.1515 | 342 | 7 | 341 | 2 | 2 | 100.0000 | |
| cchapple-custom | INDEL | * | map_l150_m0_e0 | het | 93.0816 | 95.6012 | 90.6915 | 92.2394 | 326 | 15 | 341 | 35 | 5 | 14.2857 | |
| cchapple-custom | INDEL | C6_15 | HG002complexvar | * | 96.6006 | 100.0000 | 93.4247 | 83.0940 | 4 | 0 | 341 | 24 | 11 | 45.8333 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.4169 | 99.4169 | 99.4169 | 84.8965 | 341 | 2 | 341 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e0 | homalt | 97.6160 | 95.8791 | 99.4169 | 80.7412 | 349 | 15 | 341 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m2_e1 | het | 80.0469 | 67.1260 | 99.1279 | 94.7816 | 341 | 167 | 341 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 59.2949 | 45.8221 | 83.9901 | 84.3906 | 340 | 402 | 341 | 65 | 1 | 1.5385 | |
| mlin-fermikit | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 95.6348 | 93.9058 | 97.4286 | 67.0123 | 339 | 22 | 341 | 9 | 7 | 77.7778 | |
| ltrigg-rtg2 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 49.6307 | 343 | 0 | 341 | 0 | 0 | ||
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7101 | 99.4220 | 100.0000 | 73.1707 | 344 | 2 | 341 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.2722 | 99.4169 | 99.1279 | 85.2297 | 341 | 2 | 341 | 3 | 1 | 33.3333 | |
| mlin-fermikit | INDEL | I1_5 | map_l100_m1_e0 | homalt | 74.4541 | 65.8301 | 85.6784 | 74.7141 | 341 | 177 | 341 | 57 | 55 | 96.4912 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m2_e0 | homalt | 96.1918 | 93.6813 | 98.8406 | 82.0686 | 341 | 23 | 341 | 4 | 1 | 25.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8540 | 99.7085 | 100.0000 | 50.1462 | 342 | 1 | 341 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 94.0671 | 98.5507 | 89.9736 | 92.9238 | 340 | 5 | 341 | 38 | 1 | 2.6316 | |