PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
25951-26000 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8647 | 100.0000 | 99.7297 | 81.2373 | 369 | 0 | 369 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 80.2674 | 369 | 0 | 369 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.0909 | 96.7581 | 99.4609 | 78.0343 | 388 | 13 | 369 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.4609 | 99.1935 | 99.7297 | 84.2620 | 369 | 3 | 369 | 1 | 1 | 100.0000 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8647 | 100.0000 | 99.7297 | 82.0301 | 369 | 0 | 369 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 79.9744 | 90.9326 | 71.3733 | 92.8433 | 351 | 35 | 369 | 148 | 33 | 22.2973 | |
| jli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 81.1831 | 369 | 0 | 369 | 0 | 0 | ||
| jli-custom | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.3271 | 99.1935 | 99.4609 | 85.1719 | 369 | 3 | 369 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.7836 | 92.3684 | 99.4609 | 59.6300 | 351 | 29 | 369 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 85.1147 | 96.8338 | 75.9259 | 61.8824 | 367 | 12 | 369 | 117 | 115 | 98.2906 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.2259 | 93.4307 | 99.1935 | 71.5379 | 384 | 27 | 369 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_siren | * | 75.5000 | 73.4774 | 77.6371 | 87.1753 | 374 | 135 | 368 | 106 | 86 | 81.1321 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 76.5595 | 74.4422 | 78.8009 | 51.4553 | 367 | 126 | 368 | 99 | 99 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | HG002compoundhet | het | 34.2987 | 89.1358 | 21.2349 | 37.1418 | 361 | 44 | 368 | 1365 | 1360 | 99.6337 | |
| rpoplin-dv42 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.0579 | 98.3957 | 99.7290 | 58.9087 | 368 | 6 | 368 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.1914 | 98.9247 | 99.4595 | 86.3921 | 368 | 4 | 368 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.1914 | 98.9247 | 99.4595 | 86.5160 | 368 | 4 | 368 | 2 | 2 | 100.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.5303 | 98.9305 | 98.1333 | 57.4347 | 370 | 4 | 368 | 7 | 4 | 57.1429 | |
| ckim-gatk | SNP | tv | map_l250_m1_e0 | homalt | 60.1307 | 42.9907 | 100.0000 | 93.6519 | 368 | 488 | 368 | 0 | 0 | ||
| cchapple-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.1942 | 99.4652 | 98.9247 | 51.8135 | 372 | 2 | 368 | 4 | 3 | 75.0000 | |
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8643 | 99.7290 | 100.0000 | 80.4255 | 368 | 1 | 368 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.5879 | 97.0976 | 96.0836 | 58.4599 | 368 | 11 | 368 | 15 | 15 | 100.0000 | |
| hfeng-pmm2 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.7829 | 92.3684 | 99.4595 | 64.7619 | 351 | 29 | 368 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.9619 | 96.5087 | 99.4595 | 77.8443 | 387 | 14 | 368 | 2 | 2 | 100.0000 | |
| jlack-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 96.1992 | 95.0777 | 97.3475 | 90.9113 | 367 | 19 | 367 | 10 | 7 | 70.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.1892 | 98.6559 | 99.7283 | 85.0528 | 367 | 5 | 367 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.1863 | 98.9160 | 99.4580 | 80.5789 | 365 | 4 | 367 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m2_e1 | homalt | 99.0553 | 98.6559 | 99.4580 | 88.0078 | 367 | 5 | 367 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | INDEL | D1_5 | map_l100_m0_e0 | homalt | 97.1860 | 98.0620 | 96.3255 | 87.0584 | 253 | 5 | 367 | 14 | 10 | 71.4286 | |
| astatham-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.8944 | 97.9221 | 97.8667 | 79.3046 | 377 | 8 | 367 | 8 | 7 | 87.5000 | |
| ndellapenna-hhga | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.4803 | 98.6631 | 96.3255 | 58.8553 | 369 | 5 | 367 | 14 | 8 | 57.1429 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 63.3305 | 56.2021 | 72.5296 | 71.5411 | 367 | 286 | 367 | 139 | 118 | 84.8921 | |
| ckim-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.8944 | 97.9221 | 97.8667 | 79.2359 | 377 | 8 | 367 | 8 | 7 | 87.5000 | |
| cchapple-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1736 | 98.3607 | 100.0000 | 47.7208 | 120 | 2 | 367 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l125_m1_e0 | het | 85.6476 | 75.5144 | 98.9218 | 88.5352 | 367 | 119 | 367 | 4 | 1 | 25.0000 | |
| egarrison-hhga | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 63.1067 | 46.2156 | 99.4565 | 35.5517 | 403 | 469 | 366 | 2 | 2 | 100.0000 | |
| ckim-vqsr | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.7615 | 97.6623 | 97.8610 | 79.2798 | 376 | 9 | 366 | 8 | 7 | 87.5000 | |
| mlin-fermikit | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 84.8660 | 86.0092 | 83.7529 | 81.8446 | 375 | 61 | 366 | 71 | 69 | 97.1831 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 97.2164 | 98.6631 | 95.8115 | 54.1966 | 369 | 5 | 366 | 16 | 6 | 37.5000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e1 | homalt | 98.6464 | 97.8495 | 99.4565 | 80.1510 | 364 | 8 | 366 | 2 | 1 | 50.0000 | |
| rpoplin-dv42 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.4565 | 99.1870 | 99.7275 | 80.7349 | 366 | 3 | 366 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e1 | homalt | 98.9189 | 98.3871 | 99.4565 | 84.6603 | 366 | 6 | 366 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 96.4427 | 96.5699 | 96.3158 | 59.3148 | 366 | 13 | 366 | 14 | 14 | 100.0000 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.8334 | 96.0100 | 99.7275 | 78.6876 | 385 | 16 | 366 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | tv | map_l250_m2_e1 | het | 31.3759 | 18.6260 | 99.4565 | 98.6990 | 366 | 1599 | 366 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.7615 | 97.6623 | 97.8610 | 79.0945 | 376 | 9 | 366 | 8 | 7 | 87.5000 | |
| bgallagher-sentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.2125 | 91.3158 | 99.4565 | 63.2368 | 347 | 33 | 366 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 87.2342 | 94.3005 | 81.1530 | 90.5033 | 364 | 22 | 366 | 85 | 3 | 3.5294 | |
| ckim-dragen | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8643 | 99.7290 | 100.0000 | 82.4038 | 368 | 1 | 366 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D1_5 | map_l125_m2_e1 | homalt | 98.9189 | 98.3871 | 99.4565 | 86.2224 | 366 | 6 | 366 | 2 | 2 | 100.0000 | |