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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 515 516 517 518 519 520 521 522 523 ... 1720 1721 » 25901-25950 / 86044 show all
dgrover-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.0678	92.8947	99.4652	64.2789	353	27	372	2	2	100.0000
ckim-isaac	INDEL	D16_PLUS	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	85.6175	75.6148	98.6702	63.9501	369	119	371	5	3	60.0000
ckim-isaac	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	78.0231	64.9737	97.6316	49.3333	371	200	371	9	8	88.8889
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	51.8807	374	0	371	0	0
mlin-fermikit	INDEL	D1_5	map_l125_m1_e0	het	67.0857	51.2397	97.1204	79.0685	372	354	371	11	4	36.3636
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	95.4955	96.8668	94.1624	79.5749	371	12	371	23	18	78.2609
qzeng-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	64.0961	94.0104	48.6239	70.6199	361	23	371	392	15	3.8265
ciseli-custom	INDEL	*	map_l125_m0_e0	het	66.8718	63.0324	71.2092	93.2956	370	217	371	150	76	50.6667
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	95.1282	97.8892	92.5187	45.3678	371	8	371	30	24	80.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8661	99.7326	100.0000	52.3748	373	1	371	0	0
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4638	99.1979	99.7312	59.5652	371	3	371	1	0	0.0000
asubramanian-gatk	INDEL	I1_5	map_l125_m1_e0	het	85.0612	76.1317	96.3636	91.7079	370	116	371	14	1	7.1429
astatham-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	95.9262	92.6316	99.4638	64.1001	352	28	371	2	2	100.0000
gduggal-snapplat	INDEL	D1_5	HG002compoundhet	homalt	26.1575	72.5086	15.9570	58.0098	211	80	371	1954	1741	89.0993
gduggal-snapplat	INDEL	D6_15	HG002complexvar	homalt	52.8983	39.9487	78.2700	68.0162	467	702	371	103	66	64.0777
gduggal-snapfb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	71.8992	96.8668	57.1649	88.9701	371	12	371	278	23	8.2734
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	82.9090	71.0794	99.4624	29.2776	349	142	370	2	2	100.0000
astatham-gatk	INDEL	D1_5	map_l125_m2_e1	homalt	99.4624	99.4624	99.4624	86.1090	370	2	370	2	2	100.0000
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	97.2405	95.8549	98.6667	91.1368	370	16	370	5	3	60.0000
bgallagher-sentieon	INDEL	D1_5	map_l125_m2_e1	homalt	99.4624	99.4624	99.4624	86.0098	370	2	370	2	2	100.0000
ciseli-custom	INDEL	*	func_cds	*	84.1100	83.3708	84.8624	37.1758	371	74	370	66	30	45.4545
ciseli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	71.8123	94.5170	57.9030	83.9608	362	21	370	269	72	26.7658
ltrigg-rtg2	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	96.4981	93.2331	100.0000	49.1758	372	27	370	0	0
mlin-fermikit	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	69.6084	54.3247	96.8586	71.6196	358	301	370	12	11	91.6667
mlin-fermikit	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	69.6084	54.3247	96.8586	71.6196	358	301	370	12	11	91.6667
jmaeng-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	97.2405	95.8549	98.6667	91.0990	370	16	370	5	3	60.0000
hfeng-pmm2	INDEL	D1_5	map_l125_m2_e1	homalt	99.4624	99.4624	99.4624	84.6217	370	2	370	2	2	100.0000
hfeng-pmm3	INDEL	D1_5	map_l125_m2_e1	homalt	99.5962	99.4624	99.7305	83.3707	370	2	370	1	1	100.0000
hfeng-pmm3	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.0664	92.8947	99.4624	64.1618	353	27	370	2	2	100.0000
hfeng-pmm1	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	96.0664	92.8947	99.4624	64.1618	353	27	370	2	2	100.0000
jlack-gatk	INDEL	I16_PLUS	lowcmp_SimpleRepeat_quadTR_11to50	*	96.3542	95.3608	97.3684	75.3407	370	18	370	10	7	70.0000
rpoplin-dv42	INDEL	D1_5	map_l125_m2_e1	homalt	99.0629	99.4624	98.6667	86.1470	370	2	370	5	5	100.0000
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8647	100.0000	99.7297	81.5645	369	0	369	1	1	100.0000
mlin-fermikit	INDEL	I16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	*	82.7354	76.8750	89.5631	81.5825	369	111	369	43	43	100.0000
ndellapenna-hhga	INDEL	D1_5	map_l125_m2_e1	homalt	99.0604	99.1935	98.9276	85.4807	369	3	369	4	4	100.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	81.9472	369	0	369	0	0
asubramanian-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8643	99.7290	100.0000	81.9295	368	1	369	0	0
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	81.9648	369	0	369	0	0
anovak-vg	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	32.6056	25.2495	46.0100	54.7659	253	749	369	433	324	74.8268
ckim-vqsr	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	82.0525	369	0	369	0	0
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	82.7698	70.8758	99.4609	27.5391	348	143	369	2	2	100.0000
ckim-vqsr	INDEL	D1_5	map_l125_m2_e1	homalt	99.3271	99.1935	99.4609	86.4599	369	3	369	2	2	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	81.9824	369	0	369	0	0
gduggal-snapvard	INDEL	*	map_l125_m0_e0	homalt	92.1348	86.6197	98.4000	84.7437	246	38	369	6	4	66.6667
cchapple-custom	INDEL	D6_15	map_siren	het	94.8724	94.6429	95.1031	81.6462	265	15	369	19	8	42.1053
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	82.0525	369	0	369	0	0
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_51to200	hetalt	82.7698	70.8758	99.4609	27.5391	348	143	369	2	2	100.0000
ckim-gatk	INDEL	D1_5	map_l125_m2_e1	homalt	99.3271	99.1935	99.4609	86.4599	369	3	369	2	2	100.0000
hfeng-pmm2	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	96.0938	96.0938	96.0938	84.8401	369	15	369	15	2	13.3333
hfeng-pmm2	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	100.0000	100.0000	100.0000	80.6806	369	0	369	0	0

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