PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
2501-2550 / 86044 show all
gduggal-snapfbSNPtimap_l125_m2_e0*
96.9548
96.8008
97.1093
73.8651
2929096829294872409
46.9037
jli-customSNP*map_l125_m2_e1het
99.0901
98.8360
99.3454
70.6523
292953452929219354
27.9793
cchapple-customSNPtimap_l100_m1_e0het
97.1277
97.7690
96.4947
71.3539
29274668292901064268
25.1880
gduggal-snapvardSNPtimap_l100_m2_e0het
93.6224
96.4339
90.9701
78.1195
295301092292762906248
8.5341
gduggal-bwafbSNP*map_l125_m2_e1het
98.4726
98.7517
98.1951
76.1869
2927037029270538123
22.8625
egarrison-hhgaSNP*map_l125_m2_e1het
99.2353
98.7314
99.7444
71.4034
29264376292647528
37.3333
gduggal-bwavardINDELI1_5HG002complexvar*
92.2209
90.6273
93.8716
50.7362
3023631272924119091668
87.3756
gduggal-snapplatSNPtimap_l100_m2_e0het
95.5194
95.3171
95.7225
80.1164
291881434292261306667
51.0720
gduggal-bwavardSNPtimap_l125_m2_e0*
96.0478
97.4585
94.6773
79.7239
29489769292251643116
7.0603
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
92.9151
90.2558
95.7358
51.6673
23992592920913011194
91.7756
hfeng-pmm3SNPtimap_l125_m1_e0*
99.5837
99.4989
99.6687
69.3283
29188147291849716
16.4948
hfeng-pmm2SNPtimap_l125_m1_e0*
99.4105
99.4648
99.3563
71.7136
291781572917418923
12.1693
bgallagher-sentieonSNPtimap_l125_m1_e0*
99.3257
99.4273
99.2243
71.0550
291671682916322842
18.4211
gduggal-snapvardSNPtimap_l125_m2_e1*
93.9227
96.2838
91.6745
79.2018
294331136291582648226
8.5347
eyeh-varpipeSNPtimap_l100_m1_e0het
99.0514
99.6226
98.4868
69.7302
298291132915844819
4.2411
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.1631
95.7743
98.5927
68.0014
2919212882914441697
23.3173
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.1631
95.7743
98.5927
68.0014
2919212882914441697
23.3173
dgrover-gatkSNPtimap_l125_m1_e0*
99.3758
99.3284
99.4233
72.4326
291381972913416941
24.2604
bgallagher-sentieonSNP*map_l125_m2_e0het
99.0076
99.3826
98.6355
75.8378
291371812913140355
13.6476
mlin-fermikitSNPtimap_l100_m1_e0*
73.0893
60.7644
91.6861
50.6018
29125188062912526412337
88.4892
hfeng-pmm3SNP*map_l125_m2_e0het
99.4247
99.3281
99.5214
72.2786
291211972911514013
9.2857
dgrover-gatkSNP*map_l125_m2_e0het
99.1639
99.3212
99.0070
77.2838
291191992911329256
19.1781
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
69.8130
95.1115
55.1450
68.5922
289901490291052367422789
96.2617
ghariani-varprowlINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
69.8130
95.1115
55.1450
68.5922
289901490291052367422789
96.2617
hfeng-pmm1SNPtimap_l125_m1_e0*
99.4515
99.2091
99.6951
68.8149
29103232290998925
28.0899
gduggal-snapplatSNP*map_l150_m2_e1*
92.7947
90.2887
95.4437
85.1006
290823128290961389765
55.0756
hfeng-pmm2SNP*map_l125_m2_e0het
99.1177
99.2564
98.9794
75.5476
291002182909430025
8.3333
gduggal-snapvardSNP*map_l150_m1_e0*
92.1558
96.2756
88.3741
81.2786
294691140290913827280
7.3164
raldana-dualsentieonSNPtimap_l125_m1_e0*
99.1157
99.1614
99.0701
69.2148
290892462908527311
4.0293
ckim-dragenSNPtimap_l125_m1_e0*
98.4145
99.1171
97.7219
72.4285
290762592908367879
11.6519
jli-customSNPtimap_l125_m1_e0*
99.3574
99.1001
99.6162
66.6526
290712642906911241
36.6071
egarrison-hhgaSNPtimap_l125_m1_e0*
99.4628
99.0932
99.8351
68.9921
29069266290694824
50.0000
rpoplin-dv42SNPtimap_l125_m1_e0*
99.2894
99.0830
99.4967
68.8733
2906626929062147101
68.7075
ndellapenna-hhgaSNP*map_l125_m2_e1het
98.8584
98.0229
99.7083
70.3755
29054586290548536
42.3529
jpowers-varprowlSNPtimap_l100_m1_e0het
97.5455
97.0209
98.0758
71.2709
2905089229052570164
28.7719
jlack-gatkSNP*map_l125_m2_e0het
94.4864
99.0654
90.3119
83.7916
29044274290383115221
7.0947
ckim-dragenSNP*map_l125_m2_e0het
97.7348
98.9665
96.5334
78.5462
2901530329016104291
8.7332
ghariani-varprowlSNP*map_l125_m2_e0het
97.3365
98.9699
95.7561
79.6531
29016302290161286236
18.3515
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.7091
96.6601
98.7812
70.7632
29462101829015358247
68.9944
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.7091
96.6601
98.7812
70.7632
29462101829015358247
68.9944
rpoplin-dv42SNP*map_l125_m2_e0het
99.1051
98.9733
99.2372
71.6337
2901730129011223129
57.8475
raldana-dualsentieonSNP*map_l125_m2_e0het
98.7929
98.9733
98.6131
73.9991
29017301290114084
0.9804
gduggal-bwaplatSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
89.3508
81.7668
98.4855
74.7866
28961645829002446106
23.7668
hfeng-pmm1SNP*map_l125_m2_e0het
99.2641
98.9290
99.6016
71.5339
290043142899811629
25.0000
jlack-gatkSNPtimap_l125_m1_e0*
96.7083
98.8614
94.6470
78.3386
29001334289971640151
9.2073
gduggal-bwafbSNPtimap_l125_m1_e0*
98.9304
98.8478
99.0132
72.1354
289973382899728984
29.0657
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.7526
96.6010
98.9320
70.8092
29444103628994313239
76.3578
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.7526
96.6010
98.9320
70.8092
29444103628994313239
76.3578
ltrigg-rtg1SNP*map_l125_m2_e1het
98.7345
97.7868
99.7007
62.3395
28984656289858712
13.7931
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
97.6456
96.4829
98.8367
71.2472
29408107228971341255
74.7801