PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
201-250 / 86044 show all
mlin-fermikitSNPtv**
98.7665
98.1308
99.4104
19.3147
9515721812695150656434116
72.9399
asubramanian-gatkSNPtv**
98.7904
97.7276
99.8765
24.3508
94765522035947577117261
5.2048
gduggal-bwaplatSNPtv**
98.5599
97.4574
99.6876
31.4101
945035246559452542962440
14.8548
ckim-isaacSNPtv**
98.3371
96.7926
99.9317
18.3312
93859631102938905642418
65.1090
hfeng-pmm1SNPti*homalt
99.9926
99.9908
99.9944
16.6970
802964748029574535
77.7778
hfeng-pmm3SNPti*homalt
99.9929
99.9905
99.9953
16.6242
802962768029533827
71.0526
hfeng-pmm2SNPti*homalt
99.9915
99.9903
99.9927
16.7561
802960788029525948
81.3559
raldana-dualsentieonSNPti*homalt
99.9899
99.9839
99.9959
15.7711
8029091298029013332
96.9697
jli-customSNPti*homalt
99.9866
99.9797
99.9934
15.9268
8028751638028705342
79.2453
bgallagher-sentieonSNPti*homalt
99.9867
99.9791
99.9944
15.8584
8028701688028614541
91.1111
dgrover-gatkSNPti*homalt
99.9851
99.9756
99.9946
15.9219
8028421968028334339
90.6977
rpoplin-dv42SNPti*homalt
99.9800
99.9747
99.9853
16.8487
802835203802832118106
89.8305
jpowers-varprowlSNPti*homalt
99.8713
99.9620
99.7807
18.3988
80273330580278417641014
57.4830
ghariani-varprowlSNPti*homalt
99.8530
99.9608
99.7455
17.9110
80272031580276920481014
49.5117
ckim-dragenSNPti*homalt
99.9710
99.9493
99.9928
15.7227
8026314078027385851
87.9310
astatham-gatkSNPti*homalt
99.9764
99.9582
99.9946
15.8604
8027023368026934341
95.3488
jlack-gatkSNPti*homalt
99.9698
99.9522
99.9874
15.9699
80265438480264410166
65.3465
ltrigg-rtg2SNPti*homalt
99.9701
99.9529
99.9873
15.8538
80265837880255410298
96.0784
ltrigg-rtg1SNPti*homalt
99.9664
99.9474
99.9854
16.2302
802614422802519117112
95.7265
egarrison-hhgaSNPti*homalt
99.9365
99.8935
99.9794
16.8582
802183855802203165113
68.4848
ndellapenna-hhgaSNPti*homalt
99.9286
99.8893
99.9678
16.7330
802149889802170258209
81.0078
gduggal-bwafbSNPti*homalt
99.9234
99.8676
99.9793
17.0184
8019761063801993166111
66.8675
cchapple-customSNPti*homalt
99.9468
99.8984
99.9953
15.1867
8022228168015523834
89.4737
gduggal-snapfbSNPti*homalt
99.7832
99.8062
99.7602
19.1162
80148315568015321927269
13.9595
ciseli-customSNPti*homalt
98.8778
99.5909
98.1749
17.4213
7997543285797240148217334
49.4838
jmaeng-gatkSNPti*homalt
99.6264
99.2642
99.9912
16.0789
79712959097971207046
65.7143
ckim-gatkSNPti*homalt
99.6240
99.2571
99.9936
16.1503
79707259667970635133
64.7059
mlin-fermikitSNPti*homalt
99.0118
99.0588
98.9648
15.5441
795481755879550283218052
96.7672
gduggal-snapplatSNPti*homalt
99.4971
99.0644
99.9337
17.3977
7955267513795327528217
41.0985
qzeng-customSNPti*homalt
99.6207
99.3383
99.9047
15.9860
7977255314792891756473
62.5661
gduggal-bwavardSNPti*homalt
99.5201
99.0724
99.9718
15.7269
7955907449791466223186
83.4081
gduggal-snapvardSNPti*homalt
99.4493
98.9663
99.9370
16.0694
7947388301790421498326
65.4618
eyeh-varpipeSNPti*homalt
99.9720
99.9710
99.9731
16.3629
80280623379029721389
41.7840
anovak-vgSNPti*homalt
99.1281
98.7623
99.4967
15.3503
793100993979009739973582
89.6172
gduggal-bwaplatSNPti*homalt
99.0843
98.2012
99.9834
17.0820
78859314445788346131112
85.4962
ckim-vqsrSNPti*homalt
99.0608
98.1423
99.9967
16.3042
788120149187881112625
96.1538
asubramanian-gatkSNPti*homalt
98.9721
97.9680
99.9969
16.0441
786720163187867112422
91.6667
ckim-isaacSNPti*homalt
98.4855
97.0214
99.9944
13.4256
779120239197791534432
72.7273
ckim-dragenSNP*HG002complexvar*
99.9301
99.9223
99.9379
19.4552
753795586754278469236
50.3198
bgallagher-sentieonSNP*HG002complexvar*
99.9538
99.9332
99.9744
19.0217
75387750475372219384
43.5233
dgrover-gatkSNP*HG002complexvar*
99.9517
99.9260
99.9773
19.0606
75382355875366817188
51.4620
jli-customSNP*HG002complexvar*
99.9396
99.9065
99.9727
19.0201
75367670575356520691
44.1748
jlack-gatkSNP*HG002complexvar*
99.9118
99.8944
99.9292
19.3948
753584797753425534201
37.6404
rpoplin-dv42SNP*HG002complexvar*
99.9179
99.8694
99.9664
18.9545
753396985753221253214
84.5850
ltrigg-rtg2SNP*HG002complexvar*
99.8684
99.7896
99.9473
18.8678
7527971587752943397167
42.0655
gduggal-bwafbSNP*HG002complexvar*
99.8109
99.7664
99.8554
20.0831
75262317627527831090464
42.5688
hfeng-pmm3SNP*HG002complexvar*
99.8875
99.7894
99.9859
18.8968
752792158975264510640
37.7358
ltrigg-rtg1SNP*HG002complexvar*
99.8490
99.7395
99.9587
18.9301
7524191965752595311136
43.7299
ghariani-varprowlSNP*HG002complexvar*
99.3539
99.7064
99.0038
22.0629
752159221575254975721579
20.8531
raldana-dualsentieonSNP*HG002complexvar*
99.8769
99.7713
99.9826
18.8281
752656172575251113147
35.8779