PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2351-2400 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | SNP | * | map_l150_m1_e0 | * | 99.0457 | 98.8533 | 99.2389 | 73.2840 | 30258 | 351 | 30252 | 232 | 150 | 64.6552 | |
| jli-custom | SNP | * | map_l150_m1_e0 | * | 99.1511 | 98.8337 | 99.4706 | 71.1384 | 30252 | 357 | 30249 | 161 | 58 | 36.0248 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.1875 | 96.2685 | 98.1242 | 59.9927 | 30236 | 1172 | 30236 | 578 | 510 | 88.2353 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.1875 | 96.2685 | 98.1242 | 59.9927 | 30236 | 1172 | 30236 | 578 | 510 | 88.2353 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.1776 | 97.0330 | 99.3494 | 70.2755 | 30219 | 924 | 30236 | 198 | 22 | 11.1111 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.1776 | 97.0330 | 99.3494 | 70.2755 | 30219 | 924 | 30236 | 198 | 22 | 11.1111 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e1 | * | 98.9476 | 98.8812 | 99.0140 | 74.0560 | 30227 | 342 | 30227 | 301 | 85 | 28.2392 | |
| jlack-gatk | SNP | ti | map_l125_m2_e1 | * | 96.7790 | 98.8910 | 94.7553 | 79.7616 | 30230 | 339 | 30226 | 1673 | 151 | 9.0257 | |
| anovak-vg | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 63.5093 | 59.8218 | 67.6813 | 39.7409 | 21890 | 14702 | 30217 | 14429 | 11301 | 78.3214 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 92.7218 | 88.4618 | 97.4128 | 51.1450 | 15763 | 2056 | 30197 | 802 | 660 | 82.2943 | |
| jlack-gatk | SNP | * | map_l150_m1_e0 | * | 95.4882 | 98.6507 | 92.5222 | 82.5036 | 30196 | 413 | 30190 | 2440 | 190 | 7.7869 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.5832 | 95.9437 | 99.2798 | 56.3557 | 30134 | 1274 | 30188 | 219 | 93 | 42.4658 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.5832 | 95.9437 | 99.2798 | 56.3557 | 30134 | 1274 | 30188 | 219 | 93 | 42.4658 | |
| gduggal-bwafb | SNP | * | map_l150_m1_e0 | * | 98.6339 | 98.5952 | 98.6726 | 76.5153 | 30179 | 430 | 30179 | 406 | 107 | 26.3547 | |
| jpowers-varprowl | INDEL | I1_5 | HG002complexvar | * | 92.7158 | 90.8192 | 94.6934 | 52.3150 | 30300 | 3063 | 30175 | 1691 | 1600 | 94.6186 | |
| ghariani-varprowl | SNP | ti | map_l125_m2_e1 | * | 98.2162 | 98.7046 | 97.7326 | 76.3818 | 30173 | 396 | 30173 | 700 | 158 | 22.5714 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e1 | het | 99.0385 | 99.6286 | 98.4553 | 71.2000 | 30845 | 115 | 30148 | 473 | 19 | 4.0169 | |
| egarrison-hhga | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.7893 | 98.0137 | 97.5659 | 71.4911 | 30150 | 611 | 30142 | 752 | 362 | 48.1383 | |
| ndellapenna-hhga | SNP | ti | map_l100_m2_e0 | het | 99.1023 | 98.4194 | 99.7947 | 64.2605 | 30138 | 484 | 30140 | 62 | 24 | 38.7097 | |
| ndellapenna-hhga | SNP | ti | map_l125_m2_e1 | * | 99.2034 | 98.5901 | 99.8245 | 69.6481 | 30138 | 431 | 30138 | 53 | 27 | 50.9434 | |
| ghariani-varprowl | SNP | * | map_l150_m1_e0 | * | 97.5510 | 98.4482 | 96.6701 | 79.2964 | 30134 | 475 | 30134 | 1038 | 222 | 21.3873 | |
| jpowers-varprowl | INDEL | D1_5 | HG002complexvar | * | 93.8573 | 92.4805 | 95.2757 | 55.2360 | 30255 | 2460 | 30130 | 1494 | 1377 | 92.1687 | |
| anovak-vg | INDEL | * | HG002complexvar | het | 72.0208 | 60.7851 | 88.3522 | 57.0408 | 28090 | 18122 | 30129 | 3972 | 2361 | 59.4411 | |
| ndellapenna-hhga | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.4179 | 97.9487 | 96.8928 | 71.1401 | 30130 | 631 | 30123 | 966 | 497 | 51.4493 | |
| ltrigg-rtg1 | SNP | ti | map_l100_m2_e0 | het | 99.0198 | 98.3084 | 99.7416 | 57.0120 | 30104 | 518 | 30106 | 78 | 7 | 8.9744 | |
| hfeng-pmm3 | SNP | ti | map_l125_m2_e0 | * | 99.5898 | 99.5076 | 99.6722 | 70.9814 | 30109 | 149 | 30105 | 99 | 16 | 16.1616 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e1 | * | 99.1256 | 98.4625 | 99.7978 | 64.9540 | 30099 | 470 | 30102 | 61 | 19 | 31.1475 | |
| hfeng-pmm2 | SNP | ti | map_l125_m2_e0 | * | 99.4203 | 99.4745 | 99.3661 | 73.2412 | 30099 | 159 | 30095 | 192 | 23 | 11.9792 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 84.3407 | 95.6876 | 75.3996 | 74.3623 | 29800 | 1343 | 30092 | 9818 | 643 | 6.5492 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 84.3407 | 95.6876 | 75.3996 | 74.3623 | 29800 | 1343 | 30092 | 9818 | 643 | 6.5492 | |
| qzeng-custom | INDEL | * | HG002compoundhet | het | 90.0667 | 93.8691 | 86.5604 | 55.7571 | 3843 | 251 | 30091 | 4672 | 2782 | 59.5462 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 62.1592 | 62.6870 | 61.6403 | 53.4558 | 19107 | 11373 | 30086 | 18723 | 13632 | 72.8088 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 62.1592 | 62.6870 | 61.6403 | 53.4558 | 19107 | 11373 | 30086 | 18723 | 13632 | 72.8088 | |
| bgallagher-sentieon | SNP | ti | map_l125_m2_e0 | * | 99.3281 | 99.4316 | 99.2249 | 72.6504 | 30086 | 172 | 30082 | 235 | 42 | 17.8723 | |
| ndellapenna-hhga | SNP | * | map_l150_m1_e0 | * | 99.0061 | 98.2783 | 99.7447 | 72.1099 | 30082 | 527 | 30082 | 77 | 40 | 51.9481 | |
| mlin-fermikit | SNP | ti | map_l100_m2_e0 | * | 73.5756 | 61.3876 | 91.8021 | 54.4848 | 30056 | 18905 | 30056 | 2684 | 2362 | 88.0030 | |
| jpowers-varprowl | SNP | ti | map_l100_m2_e1 | het | 97.5492 | 97.0640 | 98.0394 | 72.8908 | 30051 | 909 | 30053 | 601 | 165 | 27.4542 | |
| dgrover-gatk | SNP | ti | map_l125_m2_e0 | * | 99.3734 | 99.3258 | 99.4210 | 73.9134 | 30054 | 204 | 30050 | 175 | 42 | 24.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.8665 | 97.8284 | 93.9817 | 74.3916 | 30093 | 668 | 30045 | 1924 | 1880 | 97.7131 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 81.9557 | 95.2253 | 71.9321 | 77.0498 | 29656 | 1487 | 30041 | 11722 | 436 | 3.7195 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 81.9557 | 95.2253 | 71.9321 | 77.0498 | 29656 | 1487 | 30041 | 11722 | 436 | 3.7195 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m2_e0 | het | 98.9081 | 98.0635 | 99.7675 | 53.0390 | 30029 | 593 | 30032 | 70 | 6 | 8.5714 | |
| gduggal-snapfb | SNP | ti | map_l100_m2_e0 | het | 97.3939 | 98.0537 | 96.7430 | 68.0809 | 30026 | 596 | 30030 | 1011 | 436 | 43.1256 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m2_e1 | * | 99.0186 | 98.1877 | 99.8636 | 61.5506 | 30015 | 554 | 30018 | 41 | 10 | 24.3902 | |
| hfeng-pmm1 | SNP | ti | map_l125_m2_e0 | * | 99.4583 | 99.2167 | 99.7011 | 70.4657 | 30021 | 237 | 30017 | 90 | 25 | 27.7778 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 57.8592 | 55.4482 | 60.4894 | 43.6279 | 17739 | 14253 | 30010 | 19602 | 17898 | 91.3070 | |
| ltrigg-rtg1 | SNP | * | map_l150_m1_e0 | * | 98.9007 | 98.0267 | 99.7905 | 66.4727 | 30005 | 604 | 30007 | 63 | 22 | 34.9206 | |
| raldana-dualsentieon | SNP | ti | map_l125_m2_e0 | * | 99.1246 | 99.1738 | 99.0754 | 71.0207 | 30008 | 250 | 30004 | 280 | 11 | 3.9286 | |
| ckim-dragen | SNP | ti | map_l125_m2_e0 | * | 98.4121 | 99.1176 | 97.7165 | 74.4145 | 29991 | 267 | 29998 | 701 | 81 | 11.5549 | |
| jli-custom | SNP | ti | map_l125_m2_e0 | * | 99.3639 | 99.1176 | 99.6114 | 68.7298 | 29991 | 267 | 29989 | 117 | 41 | 35.0427 | |