PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
23851-23900 / 86044 show all | |||||||||||||||
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.1533 | 99.2467 | 99.0602 | 83.0249 | 527 | 4 | 527 | 5 | 2 | 40.0000 | |
| hfeng-pmm2 | INDEL | I1_5 | map_l150_m2_e1 | * | 98.4994 | 98.6817 | 98.3178 | 90.3967 | 524 | 7 | 526 | 9 | 2 | 22.2222 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3401 | 99.4350 | 99.2453 | 81.4685 | 528 | 3 | 526 | 4 | 2 | 50.0000 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.3643 | 99.3432 | 95.4628 | 84.4394 | 605 | 4 | 526 | 25 | 10 | 40.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l150_m2_e0 | * | 74.1130 | 68.8073 | 80.3053 | 92.8974 | 525 | 238 | 526 | 129 | 61 | 47.2868 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 85.3531 | 80.8576 | 90.3780 | 61.9856 | 528 | 125 | 526 | 56 | 54 | 96.4286 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.1517 | 99.0584 | 99.2453 | 82.4212 | 526 | 5 | 526 | 4 | 2 | 50.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.0584 | 100.0000 | 98.1343 | 71.2755 | 525 | 0 | 526 | 10 | 10 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | segdup | het | 98.4089 | 97.7695 | 99.0566 | 94.8166 | 526 | 12 | 525 | 5 | 1 | 20.0000 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.2489 | 525 | 0 | 525 | 0 | 0 | ||
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.7542 | 99.0148 | 94.5946 | 84.0288 | 603 | 6 | 525 | 30 | 27 | 90.0000 | |
| jli-custom | INDEL | I1_5 | map_l150_m2_e1 | * | 98.8688 | 98.6817 | 99.0566 | 89.1616 | 524 | 7 | 525 | 5 | 2 | 40.0000 | |
| egarrison-hhga | INDEL | I1_5 | segdup | het | 98.2247 | 97.7695 | 98.6842 | 94.9835 | 526 | 12 | 525 | 7 | 1 | 14.2857 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.5124 | 525 | 0 | 525 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | segdup | het | 91.7878 | 98.1413 | 86.2069 | 96.5587 | 528 | 10 | 525 | 84 | 56 | 66.6667 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.6126 | 525 | 0 | 525 | 0 | 0 | ||
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.7914 | 525 | 0 | 525 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.7701 | 97.5701 | 100.0000 | 73.5650 | 522 | 13 | 525 | 0 | 0 | ||
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.7122 | 525 | 0 | 525 | 0 | 0 | ||
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 68.9533 | 525 | 0 | 525 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | HG002compoundhet | * | 28.2801 | 22.7680 | 37.3134 | 28.0307 | 533 | 1808 | 525 | 882 | 881 | 99.8866 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 525 | 0 | 525 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | I1_5 | map_l150_m2_e1 | * | 98.4039 | 98.4934 | 98.3146 | 90.3068 | 523 | 8 | 525 | 9 | 2 | 22.2222 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.4115 | 525 | 0 | 525 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | map_l100_m0_e0 | * | 97.3957 | 96.3168 | 98.4991 | 85.7449 | 523 | 20 | 525 | 8 | 3 | 37.5000 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m0_e0 | * | 96.7796 | 97.0534 | 96.5074 | 85.5741 | 527 | 16 | 525 | 19 | 5 | 26.3158 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 97.0398 | 98.4934 | 95.6284 | 92.9688 | 523 | 8 | 525 | 24 | 3 | 12.5000 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e1 | homalt | 98.7858 | 98.1481 | 99.4318 | 80.5811 | 530 | 10 | 525 | 3 | 2 | 66.6667 | |
| ckim-dragen | INDEL | I1_5 | map_l100_m2_e0 | homalt | 98.8690 | 98.8701 | 98.8679 | 81.2057 | 525 | 6 | 524 | 6 | 5 | 83.3333 | |
| ckim-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.9047 | 99.8095 | 100.0000 | 67.3317 | 524 | 1 | 524 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.3008 | 97.1963 | 99.4307 | 73.6236 | 520 | 15 | 524 | 3 | 3 | 100.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 98.4930 | 98.3051 | 98.6817 | 90.9679 | 522 | 9 | 524 | 7 | 2 | 28.5714 | |
| ckim-isaac | INDEL | I1_5 | segdup | het | 97.7612 | 97.3978 | 98.1273 | 94.4800 | 524 | 14 | 524 | 10 | 6 | 60.0000 | |
| ckim-vqsr | SNP | ti | map_l250_m0_e0 | * | 55.0131 | 38.2482 | 97.9439 | 98.4056 | 524 | 846 | 524 | 11 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m2_e0 | homalt | 99.3383 | 99.0584 | 99.6198 | 77.9732 | 526 | 5 | 524 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.9047 | 99.8095 | 100.0000 | 67.8528 | 524 | 1 | 524 | 0 | 0 | ||
| anovak-vg | INDEL | D1_5 | map_l100_m0_e0 | het | 82.2817 | 86.8020 | 78.2090 | 87.2186 | 513 | 78 | 524 | 146 | 51 | 34.9315 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.8256 | 96.4486 | 99.2424 | 73.9001 | 516 | 19 | 524 | 4 | 4 | 100.0000 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.9047 | 99.8095 | 100.0000 | 67.7340 | 524 | 1 | 524 | 0 | 0 | ||
| hfeng-pmm3 | INDEL | I1_5 | map_l150_m2_e1 | * | 98.4006 | 98.3051 | 98.4962 | 88.9741 | 522 | 9 | 524 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m0_e0 | * | 75.1793 | 60.7184 | 98.6817 | 93.9453 | 524 | 339 | 524 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l125_m2_e1 | het | 80.4615 | 67.9221 | 98.6792 | 94.7881 | 523 | 247 | 523 | 7 | 1 | 14.2857 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 33.0066 | 22.3881 | 62.7851 | 75.4350 | 540 | 1872 | 523 | 310 | 285 | 91.9355 | |
| ltrigg-rtg2 | INDEL | I1_5 | segdup | het | 98.6887 | 98.8848 | 98.4934 | 93.5006 | 532 | 6 | 523 | 8 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e1 | * | 98.6792 | 98.4934 | 98.8658 | 90.1251 | 523 | 8 | 523 | 6 | 1 | 16.6667 | |
| ndellapenna-hhga | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.6190 | 99.6190 | 99.6190 | 68.6754 | 523 | 2 | 523 | 2 | 1 | 50.0000 | |
| ckim-vqsr | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8092 | 99.6190 | 100.0000 | 67.3737 | 523 | 2 | 523 | 0 | 0 | ||
| dgrover-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.2046 | 97.0093 | 99.4297 | 73.6076 | 519 | 16 | 523 | 3 | 3 | 100.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.9045 | 99.8092 | 100.0000 | 64.4942 | 523 | 1 | 523 | 0 | 0 | ||
| egarrison-hhga | INDEL | I1_5 | map_l150_m2_e1 | * | 98.4008 | 98.4934 | 98.3083 | 90.5304 | 523 | 8 | 523 | 9 | 2 | 22.2222 | |