PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
151-200 / 86044 show all
ltrigg-rtg1SNP**homalt
99.9664
99.9480
99.9848
17.4153
11795436141179482179154
86.0335
egarrison-hhgaSNP**homalt
99.9329
99.8872
99.9785
18.1960
117883013311178859253173
68.3794
ndellapenna-hhgaSNP**homalt
99.9243
99.8838
99.9648
18.1151
117879013711178818415332
80.0000
gduggal-bwafbSNP**homalt
99.9194
99.8626
99.9762
18.5273
117854116211178572280175
62.5000
gduggal-snapfbSNP**homalt
99.6988
99.7992
99.5986
21.4529
1177792237011778604747451
9.5007
cchapple-customSNP**homalt
99.9445
99.8940
99.9951
16.2464
1178910125111776365851
87.9310
jmaeng-gatkSNP**homalt
99.5965
99.2051
99.9909
17.4792
11707809381117075710669
65.0943
ckim-gatkSNP**homalt
99.5941
99.1985
99.9929
17.5422
1170702945911706798352
62.6506
mlin-fermikitSNP**homalt
98.9666
99.0041
98.9290
17.0911
11684091175311684251264912153
96.0787
ciseli-customSNP**homalt
98.7740
99.5427
98.0170
19.0299
1174765539711681212363210880
46.0393
gduggal-snapplatSNP**homalt
99.3703
98.8374
99.9089
19.1469
11664421372011662141063359
33.7723
qzeng-customSNP**homalt
99.6134
99.3243
99.9041
17.3884
1172188797411620901115707
63.4081
gduggal-bwavardSNP**homalt
99.5128
99.0597
99.9700
16.7717
1169065110971159771348269
77.2989
anovak-vgSNP**homalt
99.1091
98.7819
99.4384
16.6644
116578714375115843965435522
84.3955
gduggal-snapvardSNP**homalt
99.4378
98.9468
99.9337
17.0443
1167733124291158113768475
61.8490
ckim-vqsrSNP**homalt
98.9894
98.0027
99.9961
17.7187
11565902357111565674541
91.1111
gduggal-bwaplatSNP**homalt
98.9364
97.9135
99.9810
18.7279
1155537246241155217220194
88.1818
eyeh-varpipeSNP**homalt
99.9696
99.9699
99.9693
17.3914
11798073551154702355142
40.0000
asubramanian-gatkSNP**homalt
98.8858
97.8294
99.9654
17.5292
115454425617115452140039
9.7500
ckim-isaacSNP**homalt
98.3805
96.8182
99.9940
14.4545
11426123755011426686950
72.4638
ckim-dragenSNPtv**
99.8136
99.9495
99.6782
25.0811
9692004909694993130164
5.2396
bgallagher-sentieonSNPtv**
99.8908
99.9655
99.8163
21.9055
969355335969269178478
4.3722
dgrover-gatkSNPtv**
99.9211
99.9611
99.8812
22.3092
969313377969227115381
7.0252
jli-customSNPtv**
99.9049
99.9528
99.8570
21.1774
969232458969166138883
5.9798
rpoplin-dv42SNPtv**
99.9512
99.9420
99.9604
21.8980
969128562969027384163
42.4479
jlack-gatkSNPtv**
99.5956
99.9388
99.2547
27.4223
9690975939690087276194
2.6663
ltrigg-rtg1SNPtv**
99.8285
99.8863
99.7709
19.9654
96859311039688592225103
4.6292
ltrigg-rtg2SNPtv**
99.8284
99.8825
99.7743
19.4672
96855711399688102192110
5.0183
hfeng-pmm3SNPtv**
99.9443
99.9171
99.9715
21.1004
96888680496880427631
11.2319
hfeng-pmm2SNPtv**
99.9268
99.9066
99.9471
21.6564
96878490696870551342
8.1871
hfeng-pmm1SNPtv**
99.9383
99.9053
99.9713
20.8629
96877291896869127843
15.4676
raldana-dualsentieonSNPtv**
99.9049
99.8971
99.9127
21.2799
96869299896861284644
5.2010
gduggal-bwafbSNPtv**
99.7254
99.8534
99.5978
25.3671
96827614229683793911282
7.2104
gduggal-snapfbSNPtv**
98.8423
99.7914
97.9112
28.0235
967675202396803620652782
3.7866
ghariani-varprowlSNPtv**
98.9190
99.7874
98.0655
30.2667
9676202062967900190931348
7.0602
egarrison-hhgaSNPtv**
99.8815
99.8074
99.9558
20.9138
9678221868967852428112
26.1682
ndellapenna-hhgaSNPtv**
99.8629
99.7865
99.9395
20.8763
9676202070967646586175
29.8635
cchapple-customSNPtv**
99.7746
99.8756
99.6738
23.8746
96848412069676373167250
7.8939
jpowers-varprowlSNPtv**
99.3067
99.4773
99.1367
27.6192
964620506996486284021363
16.2223
ckim-gatkSNPtv**
99.5705
99.3991
99.7425
27.2376
9638635827963776248884
3.3762
jmaeng-gatkSNPtv**
99.5370
99.3842
99.6902
27.5023
9637195971963632299580
2.6711
astatham-gatkSNPtv**
99.5449
99.1184
99.9751
22.0764
961141854996105923961
25.5230
eyeh-varpipeSNPtv**
98.8030
99.9607
97.6718
23.4743
96931738195864222851215
0.9409
qzeng-customSNPtv**
99.4379
99.2180
99.6588
26.4392
96211575839586193282549
16.7276
gduggal-bwavardSNPtv**
99.2324
99.0032
99.4627
26.1679
960032966695530951611540
29.8392
ciseli-customSNPtv**
96.5740
98.6920
94.5451
25.2127
95701412684954909550954019
7.2947
ckim-vqsrSNPtv**
99.1585
98.4420
99.8855
27.4583
95458215108954496109457
5.2102
gduggal-snapvardSNPtv**
98.9298
98.8902
98.9694
27.3396
9589361076295395999341577
15.8748
gduggal-snapplatSNPtv**
98.6169
98.1754
99.0623
31.7051
9520051769395236890151026
11.3810
anovak-vgSNPtv**
98.3366
98.3717
98.3016
24.5602
95390815790951566164416526
39.6934