PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TP Query FPFP gt% FP ma
1851-1900 / 86044 show all
bgallagher-sentieonSNPtimap_sirenhomalt
99.8535
99.7547
99.9524
48.7705
3782393378171816
88.8889
rpoplin-dv42SNPtimap_sirenhomalt
99.8060
99.7283
99.8838
52.4445
37813103378144442
95.4545
ltrigg-rtg2SNPtimap_sirenhomalt
99.8455
99.7415
99.9498
49.3967
3781898378121918
94.7368
ndellapenna-hhgaSNPtimap_sirenhomalt
99.8244
99.7072
99.9418
51.3860
37805111378062220
90.9091
dgrover-gatkSNPtimap_sirenhomalt
99.8204
99.6914
99.9498
49.0891
37799117377931917
89.4737
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_diTR_11to50*
94.4932
92.6377
96.4246
45.4241
3389826943775614001310
93.5714
astatham-gatkSNPtimap_sirenhomalt
99.7489
99.5437
99.9550
48.8366
37743173377371716
94.1176
gduggal-bwafbSNPtimap_sirenhomalt
99.7291
99.5253
99.9338
52.9575
37736180377362514
56.0000
ckim-dragenSNPtimap_sirenhomalt
99.7132
99.4936
99.9338
47.4447
37724192377262523
92.0000
jpowers-varprowlSNPtimap_sirenhomalt
99.6196
99.4567
99.7830
54.0684
37710206377118257
69.5122
ghariani-varprowlSNPtimap_sirenhomalt
99.5932
99.4435
99.7434
52.5183
37705211377069756
57.7320
jlack-gatkSNPtimap_sirenhomalt
99.6031
99.2879
99.9204
49.0602
37646270376403020
66.6667
ckim-isaacSNP*map_sirenhomalt
81.0505
68.1522
99.9707
46.5592
3759017566375911111
100.0000
gduggal-snapvardINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
55.4931
52.6341
58.6805
53.0447
2280920526375522644222338
84.4792
qzeng-customSNPtimap_l100_m1_e0*
87.5018
78.7403
98.4572
75.1333
377411019037460587485
82.6235
ndellapenna-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
85.7255
84.9037
86.5634
80.2326
3679365423745658145159
88.7341
ckim-isaacINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
90.8083
87.4974
94.3796
47.9598
3791754183736322251830
82.2472
gduggal-snapfbSNPtimap_sirenhomalt
99.1394
98.4334
99.8555
57.8682
37322594373225429
53.7037
cchapple-customSNPtimap_sirenhomalt
99.1409
98.3094
99.9866
47.3567
372756413725855
100.0000
egarrison-hhgaINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
85.6704
84.8021
86.5567
80.2451
3674965863720957795249
90.8289
qzeng-customSNP*map_l100_m2_e1het
87.9932
79.9949
97.7685
81.4422
37516938237154848656
77.3585
gduggal-snapfbINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
95.2178
95.1859
95.2497
71.1485
316361600371351852568
30.6695
ltrigg-rtg2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
98.1115
96.7548
99.5067
50.1900
36672123036914183147
80.3279
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.7491
97.4988
98.0006
56.6076
3695494836761750723
96.4000
astatham-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.6838
97.4223
97.9467
56.1751
3692597736731770739
95.9740
eyeh-varpipeSNPtimap_sirenhomalt
99.8945
99.8734
99.9157
53.2558
3786848367233117
54.8387
qzeng-customSNP*map_l100_m2_e0het
87.9050
79.8638
97.7467
81.4691
37056934336699846656
77.5414
jli-customINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.9489
97.2165
98.6923
51.4779
36847105536679486451
92.7984
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
69.6812
67.0967
72.4727
44.4064
2543112471366771393113653
98.0045
eyeh-varpipeINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
95.7997
94.0020
97.6675
65.5892
573636636639875794
90.7429
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.4678
96.9896
97.9508
56.0360
36761114136567765735
96.0784
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.2376
96.9527
97.5243
55.9478
36747115536556928901
97.0905
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.4429
96.9236
97.9678
56.0572
36736116636542758728
96.0422
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.1935
96.8999
97.4889
57.0530
36727117536532941927
98.5122
gduggal-bwaplatSNPtvmap_siren*
88.3540
79.4753
99.4660
75.2106
3650394273650719650
25.5102
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.2034
96.5701
97.8450
55.8440
36602130036414802774
96.5087
qzeng-customINDEL*HG002compoundhet*
82.2978
79.3825
85.4354
55.6867
2378361773641062074106
66.1511
ltrigg-rtg1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.2969
95.1533
99.5393
51.1225
36065183736299168133
79.1667
gduggal-snapfbINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
78.3192
73.5341
83.7704
54.2583
31866114693629170313645
51.8418
gduggal-bwavardSNPtimap_sirenhomalt
98.3235
96.7850
99.9118
51.1238
366971219362413228
87.5000
ciseli-customSNP*map_l125_m2_e1*
81.1911
76.9289
85.9532
77.6472
36312108903623759221525
25.7514
ciseli-customSNP*map_l100_m2_e1het
81.9772
77.3999
87.1298
75.6982
3629910599362195350161
3.0094
gduggal-snapplatSNPtimap_sirenhomalt
97.6833
95.5270
99.9392
52.4384
362201696361802218
81.8182
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.3761
95.8604
98.9406
51.0374
36333156936144387350
90.4393
hfeng-pmm2INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.3350
95.8393
98.8782
52.0725
36325157736139410384
93.6585
rpoplin-dv42INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
96.0244
95.4725
96.5827
67.7509
3618617163612012781242
97.1831
gduggal-bwaplatSNP*map_l100_m2_e1het
86.6430
76.9436
99.1406
84.8541
36085108133610931383
26.5176
astatham-gatkSNP*map_l100_m2_e1het
86.9224
77.0139
99.7569
75.4083
3611810780361078833
37.5000
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.2937
95.6572
98.9872
51.0230
36256164636066369341
92.4119
mlin-fermikitINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
84.7537
83.5791
85.9619
55.6947
3621971163606158895747
97.5887