PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1851-1900 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | SNP | ti | map_siren | homalt | 99.8535 | 99.7547 | 99.9524 | 48.7705 | 37823 | 93 | 37817 | 18 | 16 | 88.8889 | |
| rpoplin-dv42 | SNP | ti | map_siren | homalt | 99.8060 | 99.7283 | 99.8838 | 52.4445 | 37813 | 103 | 37814 | 44 | 42 | 95.4545 | |
| ltrigg-rtg2 | SNP | ti | map_siren | homalt | 99.8455 | 99.7415 | 99.9498 | 49.3967 | 37818 | 98 | 37812 | 19 | 18 | 94.7368 | |
| ndellapenna-hhga | SNP | ti | map_siren | homalt | 99.8244 | 99.7072 | 99.9418 | 51.3860 | 37805 | 111 | 37806 | 22 | 20 | 90.9091 | |
| dgrover-gatk | SNP | ti | map_siren | homalt | 99.8204 | 99.6914 | 99.9498 | 49.0891 | 37799 | 117 | 37793 | 19 | 17 | 89.4737 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 94.4932 | 92.6377 | 96.4246 | 45.4241 | 33898 | 2694 | 37756 | 1400 | 1310 | 93.5714 | |
| astatham-gatk | SNP | ti | map_siren | homalt | 99.7489 | 99.5437 | 99.9550 | 48.8366 | 37743 | 173 | 37737 | 17 | 16 | 94.1176 | |
| gduggal-bwafb | SNP | ti | map_siren | homalt | 99.7291 | 99.5253 | 99.9338 | 52.9575 | 37736 | 180 | 37736 | 25 | 14 | 56.0000 | |
| ckim-dragen | SNP | ti | map_siren | homalt | 99.7132 | 99.4936 | 99.9338 | 47.4447 | 37724 | 192 | 37726 | 25 | 23 | 92.0000 | |
| jpowers-varprowl | SNP | ti | map_siren | homalt | 99.6196 | 99.4567 | 99.7830 | 54.0684 | 37710 | 206 | 37711 | 82 | 57 | 69.5122 | |
| ghariani-varprowl | SNP | ti | map_siren | homalt | 99.5932 | 99.4435 | 99.7434 | 52.5183 | 37705 | 211 | 37706 | 97 | 56 | 57.7320 | |
| jlack-gatk | SNP | ti | map_siren | homalt | 99.6031 | 99.2879 | 99.9204 | 49.0602 | 37646 | 270 | 37640 | 30 | 20 | 66.6667 | |
| ckim-isaac | SNP | * | map_siren | homalt | 81.0505 | 68.1522 | 99.9707 | 46.5592 | 37590 | 17566 | 37591 | 11 | 11 | 100.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 55.4931 | 52.6341 | 58.6805 | 53.0447 | 22809 | 20526 | 37552 | 26442 | 22338 | 84.4792 | |
| qzeng-custom | SNP | ti | map_l100_m1_e0 | * | 87.5018 | 78.7403 | 98.4572 | 75.1333 | 37741 | 10190 | 37460 | 587 | 485 | 82.6235 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 85.7255 | 84.9037 | 86.5634 | 80.2326 | 36793 | 6542 | 37456 | 5814 | 5159 | 88.7341 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 90.8083 | 87.4974 | 94.3796 | 47.9598 | 37917 | 5418 | 37363 | 2225 | 1830 | 82.2472 | |
| gduggal-snapfb | SNP | ti | map_siren | homalt | 99.1394 | 98.4334 | 99.8555 | 57.8682 | 37322 | 594 | 37322 | 54 | 29 | 53.7037 | |
| cchapple-custom | SNP | ti | map_siren | homalt | 99.1409 | 98.3094 | 99.9866 | 47.3567 | 37275 | 641 | 37258 | 5 | 5 | 100.0000 | |
| egarrison-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 85.6704 | 84.8021 | 86.5567 | 80.2451 | 36749 | 6586 | 37209 | 5779 | 5249 | 90.8289 | |
| qzeng-custom | SNP | * | map_l100_m2_e1 | het | 87.9932 | 79.9949 | 97.7685 | 81.4422 | 37516 | 9382 | 37154 | 848 | 656 | 77.3585 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 95.2178 | 95.1859 | 95.2497 | 71.1485 | 31636 | 1600 | 37135 | 1852 | 568 | 30.6695 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.1115 | 96.7548 | 99.5067 | 50.1900 | 36672 | 1230 | 36914 | 183 | 147 | 80.3279 | |
| dgrover-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.7491 | 97.4988 | 98.0006 | 56.6076 | 36954 | 948 | 36761 | 750 | 723 | 96.4000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.6838 | 97.4223 | 97.9467 | 56.1751 | 36925 | 977 | 36731 | 770 | 739 | 95.9740 | |
| eyeh-varpipe | SNP | ti | map_siren | homalt | 99.8945 | 99.8734 | 99.9157 | 53.2558 | 37868 | 48 | 36723 | 31 | 17 | 54.8387 | |
| qzeng-custom | SNP | * | map_l100_m2_e0 | het | 87.9050 | 79.8638 | 97.7467 | 81.4691 | 37056 | 9343 | 36699 | 846 | 656 | 77.5414 | |
| jli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.9489 | 97.2165 | 98.6923 | 51.4779 | 36847 | 1055 | 36679 | 486 | 451 | 92.7984 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 69.6812 | 67.0967 | 72.4727 | 44.4064 | 25431 | 12471 | 36677 | 13931 | 13653 | 98.0045 | |
| eyeh-varpipe | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 95.7997 | 94.0020 | 97.6675 | 65.5892 | 5736 | 366 | 36639 | 875 | 794 | 90.7429 | |
| ckim-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.4678 | 96.9896 | 97.9508 | 56.0360 | 36761 | 1141 | 36567 | 765 | 735 | 96.0784 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.2376 | 96.9527 | 97.5243 | 55.9478 | 36747 | 1155 | 36556 | 928 | 901 | 97.0905 | |
| ckim-vqsr | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.4429 | 96.9236 | 97.9678 | 56.0572 | 36736 | 1166 | 36542 | 758 | 728 | 96.0422 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.1935 | 96.8999 | 97.4889 | 57.0530 | 36727 | 1175 | 36532 | 941 | 927 | 98.5122 | |
| gduggal-bwaplat | SNP | tv | map_siren | * | 88.3540 | 79.4753 | 99.4660 | 75.2106 | 36503 | 9427 | 36507 | 196 | 50 | 25.5102 | |
| jmaeng-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.2034 | 96.5701 | 97.8450 | 55.8440 | 36602 | 1300 | 36414 | 802 | 774 | 96.5087 | |
| qzeng-custom | INDEL | * | HG002compoundhet | * | 82.2978 | 79.3825 | 85.4354 | 55.6867 | 23783 | 6177 | 36410 | 6207 | 4106 | 66.1511 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.2969 | 95.1533 | 99.5393 | 51.1225 | 36065 | 1837 | 36299 | 168 | 133 | 79.1667 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 78.3192 | 73.5341 | 83.7704 | 54.2583 | 31866 | 11469 | 36291 | 7031 | 3645 | 51.8418 | |
| gduggal-bwavard | SNP | ti | map_siren | homalt | 98.3235 | 96.7850 | 99.9118 | 51.1238 | 36697 | 1219 | 36241 | 32 | 28 | 87.5000 | |
| ciseli-custom | SNP | * | map_l125_m2_e1 | * | 81.1911 | 76.9289 | 85.9532 | 77.6472 | 36312 | 10890 | 36237 | 5922 | 1525 | 25.7514 | |
| ciseli-custom | SNP | * | map_l100_m2_e1 | het | 81.9772 | 77.3999 | 87.1298 | 75.6982 | 36299 | 10599 | 36219 | 5350 | 161 | 3.0094 | |
| gduggal-snapplat | SNP | ti | map_siren | homalt | 97.6833 | 95.5270 | 99.9392 | 52.4384 | 36220 | 1696 | 36180 | 22 | 18 | 81.8182 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.3761 | 95.8604 | 98.9406 | 51.0374 | 36333 | 1569 | 36144 | 387 | 350 | 90.4393 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.3350 | 95.8393 | 98.8782 | 52.0725 | 36325 | 1577 | 36139 | 410 | 384 | 93.6585 | |
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 96.0244 | 95.4725 | 96.5827 | 67.7509 | 36186 | 1716 | 36120 | 1278 | 1242 | 97.1831 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e1 | het | 86.6430 | 76.9436 | 99.1406 | 84.8541 | 36085 | 10813 | 36109 | 313 | 83 | 26.5176 | |
| astatham-gatk | SNP | * | map_l100_m2_e1 | het | 86.9224 | 77.0139 | 99.7569 | 75.4083 | 36118 | 10780 | 36107 | 88 | 33 | 37.5000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.2937 | 95.6572 | 98.9872 | 51.0230 | 36256 | 1646 | 36066 | 369 | 341 | 92.4119 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 84.7537 | 83.5791 | 85.9619 | 55.6947 | 36219 | 7116 | 36061 | 5889 | 5747 | 97.5887 | |