PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
18301-18350 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 32.9929 | 22.6568 | 60.6716 | 52.9029 | 1344 | 4588 | 1319 | 855 | 827 | 96.7251 | |
| egarrison-hhga | SNP | tv | map_l150_m0_e0 | homalt | 99.6224 | 99.3223 | 99.9242 | 75.6143 | 1319 | 9 | 1319 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 87.8412 | 97.4766 | 79.9394 | 76.0835 | 1352 | 35 | 1319 | 331 | 6 | 1.8127 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 77.2684 | 79.2312 | 75.4005 | 60.0913 | 1278 | 335 | 1318 | 430 | 259 | 60.2326 | |
| hfeng-pmm2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.2470 | 98.6527 | 99.8485 | 51.0567 | 1318 | 18 | 1318 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | map_l125_m1_e0 | het | 97.9174 | 98.4270 | 97.4132 | 88.3493 | 1314 | 21 | 1318 | 35 | 5 | 14.2857 | |
| astatham-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.2844 | 98.6527 | 99.9242 | 48.8561 | 1318 | 18 | 1318 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 48.1828 | 41.3707 | 57.6805 | 50.9762 | 1328 | 1882 | 1318 | 967 | 944 | 97.6215 | |
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.2844 | 98.6527 | 99.9242 | 46.2291 | 1318 | 18 | 1318 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | I1_5 | map_l100_m1_e0 | * | 98.6138 | 98.2076 | 99.0233 | 82.7345 | 1315 | 24 | 1318 | 13 | 6 | 46.1538 | |
| ckim-dragen | SNP | tv | map_l150_m0_e0 | homalt | 99.2838 | 99.1717 | 99.3962 | 72.8817 | 1317 | 11 | 1317 | 8 | 6 | 75.0000 | |
| jlack-gatk | INDEL | * | map_l150_m1_e0 | * | 93.5297 | 98.0568 | 89.4022 | 92.0707 | 1312 | 26 | 1316 | 156 | 9 | 5.7692 | |
| hfeng-pmm2 | INDEL | * | map_l125_m1_e0 | het | 97.7323 | 98.2772 | 97.1935 | 88.0494 | 1312 | 23 | 1316 | 38 | 3 | 7.8947 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m1_e0 | * | 98.7623 | 98.3570 | 99.1711 | 82.7819 | 1317 | 22 | 1316 | 11 | 2 | 18.1818 | |
| ltrigg-rtg1 | INDEL | I1_5 | map_l100_m2_e0 | * | 97.8855 | 96.4912 | 99.3208 | 80.2091 | 1320 | 48 | 1316 | 9 | 3 | 33.3333 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.4824 | 99.4939 | 99.4709 | 56.5517 | 1376 | 7 | 1316 | 7 | 1 | 14.2857 | |
| egarrison-hhga | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 64.4567 | 61.1138 | 68.1865 | 74.1910 | 1284 | 817 | 1316 | 614 | 580 | 94.4625 | |
| astatham-gatk | INDEL | I1_5 | map_l100_m2_e1 | * | 96.5074 | 94.0502 | 99.0964 | 85.4242 | 1312 | 83 | 1316 | 12 | 4 | 33.3333 | |
| ndellapenna-hhga | SNP | tv | map_l150_m0_e0 | homalt | 99.4329 | 99.0211 | 99.8481 | 74.3625 | 1315 | 13 | 1315 | 2 | 1 | 50.0000 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4721 | 99.4737 | 99.4705 | 36.2584 | 1323 | 7 | 1315 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m1_e0 | * | 87.8220 | 95.5882 | 81.2230 | 87.7784 | 1040 | 48 | 1315 | 304 | 98 | 32.2368 | |
| gduggal-snapfb | INDEL | I1_5 | map_l100_m2_e0 | * | 95.9918 | 96.4912 | 95.4975 | 85.9790 | 1320 | 48 | 1315 | 62 | 13 | 20.9677 | |
| jli-custom | INDEL | * | map_l150_m1_e0 | * | 98.3164 | 98.1315 | 98.5019 | 88.5230 | 1313 | 25 | 1315 | 20 | 7 | 35.0000 | |
| dgrover-gatk | INDEL | * | map_l150_m1_e0 | * | 97.9486 | 97.9821 | 97.9151 | 90.7142 | 1311 | 27 | 1315 | 28 | 6 | 21.4286 | |
| egarrison-hhga | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 90.7286 | 91.6605 | 89.8154 | 74.1565 | 1242 | 113 | 1314 | 149 | 130 | 87.2483 | |
| ghariani-varprowl | INDEL | I1_5 | map_l100_m2_e1 | * | 93.7587 | 94.2652 | 93.2576 | 87.8356 | 1315 | 80 | 1314 | 95 | 35 | 36.8421 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 81.2017 | 96.8037 | 69.9308 | 71.0611 | 636 | 21 | 1314 | 565 | 439 | 77.6991 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m1_e0 | * | 98.3132 | 97.8342 | 98.7970 | 80.6967 | 1310 | 29 | 1314 | 16 | 2 | 12.5000 | |
| hfeng-pmm3 | INDEL | * | map_l125_m1_e0 | het | 98.2769 | 98.1273 | 98.4270 | 85.5800 | 1310 | 25 | 1314 | 21 | 3 | 14.2857 | |
| jlack-gatk | INDEL | * | map_l125_m1_e0 | het | 92.6306 | 98.1273 | 87.7170 | 91.3380 | 1310 | 25 | 1314 | 184 | 8 | 4.3478 | |
| jli-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.7437 | 95.5319 | 97.9866 | 71.7029 | 1347 | 63 | 1314 | 27 | 20 | 74.0741 | |
| jmaeng-gatk | INDEL | * | map_l125_m1_e0 | het | 95.4569 | 98.1273 | 92.9279 | 92.1545 | 1310 | 25 | 1314 | 100 | 7 | 7.0000 | |
| jpowers-varprowl | INDEL | * | map_l125_m2_e1 | het | 92.8294 | 93.3239 | 92.3401 | 89.9662 | 1314 | 94 | 1314 | 109 | 76 | 69.7248 | |
| jli-custom | SNP | ti | map_l250_m0_e0 | * | 97.5483 | 95.8394 | 99.3192 | 90.4686 | 1313 | 57 | 1313 | 9 | 7 | 77.7778 | |
| jmaeng-gatk | INDEL | * | map_l150_m1_e0 | * | 95.7315 | 97.8326 | 93.7188 | 92.7638 | 1309 | 29 | 1313 | 88 | 9 | 10.2273 | |
| dgrover-gatk | INDEL | * | map_l125_m1_e0 | het | 97.9822 | 98.0524 | 97.9120 | 89.0949 | 1309 | 26 | 1313 | 28 | 4 | 14.2857 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.2553 | 94.7939 | 99.8479 | 50.8778 | 1311 | 72 | 1313 | 2 | 1 | 50.0000 | |
| egarrison-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.8916 | 97.7256 | 98.0583 | 70.5196 | 1332 | 31 | 1313 | 26 | 12 | 46.1538 | |
| astatham-gatk | INDEL | D1_5 | HG002complexvar | hetalt | 95.3253 | 93.9349 | 96.7576 | 72.9412 | 1270 | 82 | 1313 | 44 | 43 | 97.7273 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.7489 | 95.0355 | 96.4732 | 75.4199 | 1340 | 70 | 1313 | 48 | 37 | 77.0833 | |
| ndellapenna-hhga | SNP | ti | map_l250_m0_e0 | * | 97.5483 | 95.8394 | 99.3192 | 91.9956 | 1313 | 57 | 1313 | 9 | 4 | 44.4444 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.2072 | 98.6486 | 99.7720 | 62.8458 | 1314 | 18 | 1313 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 93.5518 | 100.0000 | 87.8849 | 70.8431 | 1387 | 0 | 1313 | 181 | 3 | 1.6575 | |
| eyeh-varpipe | SNP | tv | map_l150_m0_e0 | homalt | 99.5466 | 99.4729 | 99.6203 | 81.0066 | 1321 | 7 | 1312 | 5 | 1 | 20.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e0 | * | 97.5922 | 96.4181 | 98.7952 | 83.8737 | 1319 | 49 | 1312 | 16 | 5 | 31.2500 | |
| gduggal-snapplat | INDEL | D6_15 | HG002complexvar | * | 44.3210 | 31.1015 | 77.0858 | 66.5750 | 1649 | 3653 | 1312 | 390 | 129 | 33.0769 | |
| cchapple-custom | INDEL | I1_5 | map_l100_m2_e0 | * | 97.3100 | 97.0029 | 97.6190 | 83.7387 | 1327 | 41 | 1312 | 32 | 10 | 31.2500 | |
| cchapple-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 91.8686 | 89.9090 | 93.9155 | 56.7894 | 1185 | 133 | 1312 | 85 | 81 | 95.2941 | |
| dgrover-gatk | INDEL | D1_5 | HG002complexvar | hetalt | 95.3242 | 93.9349 | 96.7552 | 73.1272 | 1270 | 82 | 1312 | 44 | 43 | 97.7273 | |
| ckim-isaac | SNP | ti | map_l150_m0_e0 | homalt | 64.3926 | 47.5190 | 99.8478 | 66.4710 | 1312 | 1449 | 1312 | 2 | 2 | 100.0000 | |